View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19192_low_26 (Length: 487)
Name: NF19192_low_26
Description: NF19192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19192_low_26 |
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Alignment Details
Target: chr1 (Bit Score: 383; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 20 - 477
Target Start/End: Complemental strand, 40222649 - 40222192
Alignment:
| Q |
20 |
cctttgtaggtgaaacttttatattattcaacaaacagatgaaaggtaacaagagagagctcattcagcttggtgttccaatatttggacagataaagga |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40222649 |
cctttgtaggtgaaacttttatattattcaacaaacagatgaaaggtaacaagagagagctcattcagcttggtgttccaatatttggacagataaagga |
40222550 |
T |
|
| Q |
120 |
ggacacaaaaagtaagaagaatttattgaagaaattttgatttatcaagtagttttactttaccttaatataagtacaatctcattcttatgatctcaaa |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40222549 |
ggacacaaaaagtaagaagaatttattgaagaaattttgatttatcaagtagttttactttaccttaatataagtacaatctcattcttatgatctcaaa |
40222450 |
T |
|
| Q |
220 |
tattgcataaatgatgattctaaactagagatatgctctgtaattctgnnnnnnnnnnnnnnnnnnnnnnnnncaggtaatatagagccaattccggcac |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
40222449 |
tattgcataaatgatgattctaaactagagatatgctctgtaattctgttttttcattttggattttcgttttcaggtaatatagagccaattccggcac |
40222350 |
T |
|
| Q |
320 |
ttctgcagcgtgttattgatcactttattcaatggcatttacttccggagtacaaaagaccaaatggttgtatcatcaacttttttgaagaggtaaattt |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40222349 |
ttctgcagcgtgttattgatcactttattcaatggcatttacttccggagtacaaaagaccaaatggttgtatcatcaacttttttgaagaggtaaattt |
40222250 |
T |
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| Q |
420 |
tgtaccatttctctcttaccactccttttaaagttattctaccttgtaatagtctctg |
477 |
Q |
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| T |
40222249 |
tgtaccatttctctcttaccactccttttaaagttattctaccttgtaatagtctctg |
40222192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 27 - 140
Target Start/End: Complemental strand, 37509351 - 37509238
Alignment:
| Q |
27 |
aggtgaaacttttatattattcaacaaacagatgaaaggtaacaagagagagctcattcagcttggtgttccaatatttggacagataaaggaggacaca |
126 |
Q |
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|||||||||||||||| ||| ||||||||| |||| || |||||||||||| | |||||| | |||||||| ||||||| |||||||| || | || |
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| T |
37509351 |
aggtgaaacttttatactatataacaaacaggtgaaggggaacaagagagagatgattcagttaggtgttcccctatttgggcagataaaagacaatacc |
37509252 |
T |
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| Q |
127 |
aaaagtaagaagaa |
140 |
Q |
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|||||||||||||| |
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| T |
37509251 |
aaaagtaagaagaa |
37509238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 371 - 418
Target Start/End: Complemental strand, 37509020 - 37508973
Alignment:
| Q |
371 |
acaaaagaccaaatggttgtatcatcaacttttttgaagaggtaaatt |
418 |
Q |
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||||||| ||||||||||| ||||||||||| ||||| |||||||||| |
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| T |
37509020 |
acaaaaggccaaatggttgcatcatcaacttctttgatgaggtaaatt |
37508973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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