View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19192_low_27 (Length: 481)
Name: NF19192_low_27
Description: NF19192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19192_low_27 |
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Alignment Details
Target: chr6 (Bit Score: 424; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 14 - 470
Target Start/End: Complemental strand, 5556741 - 5556285
Alignment:
| Q |
14 |
caaatgactataagttattaagtacttgagaaaatttcctatgaaccattcaattttgaagctgttagtttgtcattttttcattagaaaagaactctct |
113 |
Q |
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| T |
5556741 |
caaatgactataagttattaagtgcttgagaaaatttcctatgaagcattcaattttgaagctgttagtttgtcattttttcattagaaaagaactctct |
5556642 |
T |
|
| Q |
114 |
aactgtccctacgttgcttgcttgtttcaaactctttttcaatgactcaacacatacacaaaagcaagcaagaccataaagtttacgttcctaaatttgt |
213 |
Q |
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| T |
5556641 |
aactgtccctacgttgcttgcttgtttcaaactctttttcaatgactcaacacatacacaaaagcaagcaagaccataaagtttacgttcctaaatttgt |
5556542 |
T |
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| Q |
214 |
ttggtaagtttcagaaaagactacatattgtacataatagaccaacttgttgtcacatgaggataataattccacatttggatcttagtcacttttgaga |
313 |
Q |
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| T |
5556541 |
ttggtaagtttcagaaaagactacatattgtacataatagaccaacttgttgtcacatgaggataataattccacatttggatcttagtcacttttgaga |
5556442 |
T |
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| Q |
314 |
tgtataagttctataatttttcataggagttatttgatttgatcccttcatatgattaatatccatctcaaattgtttaattaatatcacttcatataat |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5556441 |
tgtataagttctataatttttcataggagttatttgatttgatcccttcatatgattaatatccatctcaaattgtttaattaatatcacttcatataat |
5556342 |
T |
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| Q |
414 |
taattaatatccatttcnnnnnnngaaagtgttagaacaccattttatttcatctca |
470 |
Q |
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| T |
5556341 |
taattaatatccatttcaaaaaaagaaagtgttagaacaacattttatttcatctca |
5556285 |
T |
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