View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19192_low_29 (Length: 450)
Name: NF19192_low_29
Description: NF19192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19192_low_29 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 393; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 17 - 441
Target Start/End: Original strand, 26754497 - 26754921
Alignment:
| Q |
17 |
ataaagatggaagtgcctcaaagactgaaggtgccttgtgagataaggaaggattttgatattgagcagattgtctttaatgaagttgatgccatggaaa |
116 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
26754497 |
ataaagatggaagtgcctcgaagactgaaggtgccttgtgagataaggaaggattttgatattgagcagattgtctttgatgaagttgatgccatggaaa |
26754596 |
T |
|
| Q |
117 |
gggaaaaggcatacgaaataggaagatcggacactgtcaaacaccttgaggatctagaaggtgtcaagtttgcaatggaggggaatggcaacatagcaga |
216 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26754597 |
gggaaaaggcatacgaaatgggaagatcggacactgtcaaacaccttgaggatccagaaggtgtcaagtttgcaatggaggggaatggcaacatagcaga |
26754696 |
T |
|
| Q |
217 |
tgagaaatgtgtctatcatgtaactccatgtttgccttgtggtgatctcaccaagtctgagattaatcccaaggtggaattcaaaaactactttgacatt |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
26754697 |
tgagaaatgtgtctatcatgtaactccatgtttgccttgtggtgatctcaccaagtctgagatgaatcccaaggtggaattcaaaaactactttgacatt |
26754796 |
T |
|
| Q |
317 |
tctgaaattgaagcagataccgaggaaagcattcaccaagaaccaaaggctaaagatacggacaaaaaccaccaacctaactggtttcatgaagaaatat |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26754797 |
tctgaaattgaagcagataccgaggaaagcattcaccaagaaccaaaggctatagatacggacaaaaaccaccaacctaactggtttcatgaagaaatat |
26754896 |
T |
|
| Q |
417 |
gtacaggaagctgctgtgatgatgt |
441 |
Q |
| |
|
|||||||||||| ||||| |||||| |
|
|
| T |
26754897 |
gtacaggaagctactgtggtgatgt |
26754921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University