View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19192_low_3 (Length: 734)

Name: NF19192_low_3
Description: NF19192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19192_low_3
NF19192_low_3
[»] chr3 (12 HSPs)
chr3 (184-439)||(29712860-29713115)
chr3 (1-439)||(29746708-29747155)
chr3 (500-711)||(29712594-29712799)
chr3 (235-406)||(29751764-29751935)
chr3 (228-375)||(29648978-29649125)
chr3 (228-297)||(30223119-30223188)
chr3 (228-376)||(30201116-30201264)
chr3 (228-312)||(30230345-30230429)
chr3 (332-396)||(29698802-29698866)
chr3 (230-376)||(30227291-30227437)
chr3 (230-339)||(29856826-29856935)
chr3 (251-332)||(30214706-30214787)
[»] chr4 (1 HSPs)
chr4 (7-174)||(41100698-41100869)
[»] chr8 (1 HSPs)
chr8 (230-432)||(1152915-1153117)
[»] chr6 (1 HSPs)
chr6 (236-376)||(5569421-5569561)
[»] chr1 (2 HSPs)
chr1 (242-324)||(16955668-16955750)
chr1 (243-324)||(16966187-16966268)


Alignment Details
Target: chr3 (Bit Score: 216; Significance: 1e-118; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 184 - 439
Target Start/End: Complemental strand, 29713115 - 29712860
Alignment:
Q  184 acaaatcttctccatgcacgaactactaaagttaaaacgacaagtcatgtgaatggtacgccacattagaggatccttgcaaatattccgccacaaagga 283  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  29713115 acaaatcttctccatgcacgaactactaaagttaaaacgacaaatcatgtgaatggtacgccacattagaggatccttgcaaatattccgccacaaagaa 29713016  T
Q  284 caaacattacgtgcaattgtcacaatttcaacagtatcaagtctttgaagtatgttcttcatcaggtctattggaagttcgagccaatttggctttgtcg 383  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  29713015 caaacattacgtgcacttgtcacaatttcaacagtatcaagtctttggagtatgttcttcatcaggtctattggaagttcaagccaatttggctttgtcg 29712916  T
Q  384 tgctctcacctttagctttcttcgtacaggaccccttcatgctacaaacgaagctg 439  Q
    |||||||||||||||||||||||||||||||   |||||||||| || ||||||||    
T  29712915 tgctctcacctttagctttcttcgtacaggaaagcttcatgctaaaatcgaagctg 29712860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 147; E-Value: 4e-77
Query Start/End: Original strand, 1 - 439
Target Start/End: Original strand, 29746708 - 29747155
Alignment:
Q  1 agatggcatataaagaaggatcagtacagttcttaacaaattattgtattattatgaaacaattggaattgaaacaaacaaaac---------taattac 91  Q
    ||||||||||  ||||||||||| | | |||  ||||||| ||| |||||||||||||||   ||||||||||||||||||||          |||||||    
T  29746708 agatggcatagcaagaaggatcaatgctgttgataacaaaatatagtattattatgaaac---tggaattgaaacaaacaaaatgcaactaattaattac 29746804  T
Q  92 ctatgagccatatatttgagaagttcatctgttccaaaccccctaacagcaatgtcttctagttgaccgcaacttaggtcaattgcacagcgacaaatct 191  Q
    |||||||||| |||||  ||||||||||| ||| ||||||  |||| || ||||||||| || | || || |||||||||||| |||| |||||||||||    
T  29746805 ctatgagccaaatattcaagaagttcatcagttgcaaaccagctaatagtaatgtcttccagattactgctacttaggtcaatggcactgcgacaaatct 29746904  T
Q  192 tctccatgcacg---aactactaaagttaaaacgacaagtcatgtgaatggtacgccacattagaggatccttgcaaatattccgccacaaaggacaaac 288  Q
    || ||||| | |   ||| |  || | | |||| || ||  |||||||||||||||||||||||||| |||| |||||| ||||||||||||||||||||    
T  29746905 tccccatgtaagcaaaacaatcaatggtgaaaccactagctatgtgaatggtacgccacattagagggtcctggcaaattttccgccacaaaggacaaac 29747004  T
Q  289 attacgtgcaattgtcacaatttcaacagtatcaagtctttgaagtatgttcttcatcaggtctattggaagttcgagccaatttggctttgtcgtgctc 388  Q
    ||| |||||| |||||||||| |||| |||| ||||||| ||||||||||||||  ||| | |||| |||||||| ||||| |||||||||||||||||     
T  29747005 attgcgtgcacttgtcacaatatcaatagtaccaagtctctgaagtatgttctttgtcaagcctatcggaagttcaagccagtttggctttgtcgtgcta 29747104  T
Q  389 tcacctttagctttcttcgtacaggaccccttcatgctacaaacgaagctg 439  Q
    ||| |||||||||||||  |||| |||||||||||||||||||||| ||||    
T  29747105 tcaactttagctttcttgatacacgaccccttcatgctacaaacgatgctg 29747155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 135; E-Value: 6e-70
Query Start/End: Original strand, 500 - 711
Target Start/End: Complemental strand, 29712799 - 29712594
Alignment:
Q  500 gtgagttacagttacaaattgcagaccaatgatagtactgaaatagccaaaaagatagatgaaaataaattgaaaattataccaaccttttaaattgaat 599  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| |||||||||     
T  29712799 gtgagctacagttacaaattgcagaccaatgatagtactgaaatagccaaaaagatagatgaaaataaattggaaattacaccaaccttgtaaattgaac 29712700  T
Q  600 ggtgaagatgaggtgatgaacagtatacttgtatgtat-gatacagaatgcagggctgaagtctgaagcagtaccttgaaatttgaaatatatataaccg 698  Q
    ||||||||||| ||||||||| |||||| ||||||||| |||| |||||||       ||  ||||||||||||||||||||||||||||||||||||||    
T  29712699 ggtgaagatgaagtgatgaactgtatacctgtatgtatcgatatagaatgc-------aaaactgaagcagtaccttgaaatttgaaatatatataaccg 29712607  T
Q  699 atttagtggtttc 711  Q
    |||||||||||||    
T  29712606 atttagtggtttc 29712594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 235 - 406
Target Start/End: Complemental strand, 29751935 - 29751764
Alignment:
Q  235 aatggtacgccacattagaggatccttgcaaatattccgccacaaaggacaaacattacgtgcaattgtcacaatttcaacagtatcaagtctttgaagt 334  Q
    |||||||| |||||| ||||||||||||||||  |||| ||| | ||||||||||||||||||| |||||||||||||||| |||||||||||  |||||    
T  29751935 aatggtactccacatgagaggatccttgcaaacgttccaccaaagaggacaaacattacgtgcacttgtcacaatttcaacggtatcaagtctccgaagt 29751836  T
Q  335 atgttcttcatcaggtctattggaagttcgagccaatttggctttgtcgtgctctcacctttagctttcttc 406  Q
    ||||||||  ||| ||| ||||||||||| | ||| |||||||||||| ||| |||| ||||  ||||||||    
T  29751835 atgttctttgtcaagtcaattggaagttcaatccagtttggctttgtcatgcactcaactttcactttcttc 29751764  T

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Target: chr3; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 228 - 375
Target Start/End: Complemental strand, 29649125 - 29648978
Alignment:
Q  228 tcatgtgaatggtacgccacattagaggatccttgcaaatattccgccacaaaggacaaacattacgtgcaattgtcacaatttcaacagtatcaagtct 327  Q
    |||||||||||||||||||||| ||||||||||| ||||| |||| | | | |||||| ||    | |||| |||| ||||||||||||||||||| ||     
T  29649125 tcatgtgaatggtacgccacatgagaggatccttacaaatgttccacgatagaggacatactaggcatgcatttgttacaatttcaacagtatcaactcc 29649026  T
Q  328 ttgaagtatgttcttcatcaggtctattggaagttcgagccaatttgg 375  Q
    |||||| |||||  |  | | |||| |||||||||| |||||||||||    
T  29649025 ttgaaggatgttaattgtgatgtctcttggaagttcaagccaatttgg 29648978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 228 - 297
Target Start/End: Complemental strand, 30223188 - 30223119
Alignment:
Q  228 tcatgtgaatggtacgccacattagaggatccttgcaaatattccgccacaaaggacaaacattacgtgc 297  Q
    ||||||||||||| |||||||| ||||||||||||||||| |||| |||  ||||||| ||||| |||||    
T  30223188 tcatgtgaatggtgcgccacatgagaggatccttgcaaatgttccaccaataaggacacacattgcgtgc 30223119  T

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Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 228 - 376
Target Start/End: Complemental strand, 30201264 - 30201116
Alignment:
Q  228 tcatgtgaatggtacgccacattagaggatccttgcaaatattccgccacaaaggacaaacattacgtgcaattgtcacaatttcaacagtatcaagtct 327  Q
    |||| ||||||||  ||||||| ||||||||||||||||| |||| ||| | |||||| || | || |||| |||||||||||||||  |||  ||| ||    
T  30201264 tcatatgaatggtgtgccacatgagaggatccttgcaaatgttccaccatagaggacacacttgacatgcacttgtcacaatttcaatggtactaagcct 30201165  T
Q  328 ttgaagtatgttcttcatcaggtctattggaagttcgagccaatttggc 376  Q
    |||||| ||||| |   | | |||| | |||||||| ||||||||||||    
T  30201164 ttgaagaatgttttctgtaatgtctttaggaagttcaagccaatttggc 30201116  T

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Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 228 - 312
Target Start/End: Complemental strand, 30230429 - 30230345
Alignment:
Q  228 tcatgtgaatggtacgccacattagaggatccttgcaaatattccgccacaaaggacaaacattacgtgcaattgtcacaatttc 312  Q
    ||||||||||||| ||||||||  ||||||||||||||||  ||| |||  ||||||| ||||| |||||| |||||| ||||||    
T  30230429 tcatgtgaatggtgcgccacatgcgaggatccttgcaaatgctccaccaataaggacacacattgcgtgcatttgtcaaaatttc 30230345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 332 - 396
Target Start/End: Complemental strand, 29698866 - 29698802
Alignment:
Q  332 agtatgttcttcatcaggtctattggaagttcgagccaatttggctttgtcgtgctctcaccttt 396  Q
    |||||||||||| |||  |||||||||||||| ||||| ||||||||| | ||||||||| ||||    
T  29698866 agtatgttcttcgtcaattctattggaagttcaagccagtttggctttcttgtgctctcatcttt 29698802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 230 - 376
Target Start/End: Complemental strand, 30227437 - 30227291
Alignment:
Q  230 atgtgaatggtacgccacattagaggatccttgcaaatattccgccacaaaggacaaacattacgtgcaattgtcacaatttcaacagtatcaagtcttt 329  Q
    |||| |||||| |||||||| ||||||||||||||||| |||| | | | |||||| || | || |||| |||||||||| || |  ||| |||| ||||    
T  30227437 atgtaaatggtgcgccacatgagaggatccttgcaaatgttccactatagaggacacacttgacatgcacttgtcacaatctcgatggtaccaagccttt 30227338  T
Q  330 gaagtatgttcttcatcaggtctattggaagttcgagccaatttggc 376  Q
    |||| |||||  |  | | |||| | |||||||| ||||||||||||    
T  30227337 gaagaatgtttgttgtgatgtctctaggaagttcaagccaatttggc 30227291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 230 - 339
Target Start/End: Complemental strand, 29856935 - 29856826
Alignment:
Q  230 atgtgaatggtacgccacattagaggatccttgcaaatattccgccacaaaggacaaacattacgtgcaattgtcacaatttcaacagtatcaagtcttt 329  Q
    |||||||||||||||||||  |||||||| || || || | || ||| | ||||||||| | || |||| || |||| |||||||  |||||||| ||||    
T  29856935 atgtgaatggtacgccacaggagaggatctttacatatgtcccaccatagaggacaaacttgacatgcacttttcacgatttcaattgtatcaagccttt 29856836  T
Q  330 gaagtatgtt 339  Q
    |||| |||||    
T  29856835 gaaggatgtt 29856826  T

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Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 251 - 332
Target Start/End: Complemental strand, 30214787 - 30214706
Alignment:
Q  251 agaggatccttgcaaatattccgccacaaaggacaaacattacgtgcaattgtcacaatttcaacagtatcaagtctttgaa 332  Q
    ||||||||||||||||| |||| ||| | |||||| || | || |||| |||||||||| ||||  ||| ||||||||||||    
T  30214787 agaggatccttgcaaatgttccaccatagaggacacacttgacatgcacttgtcacaatctcaatggtaccaagtctttgaa 30214706  T

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Target: chr4 (Bit Score: 115; Significance: 5e-58; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 7 - 174
Target Start/End: Original strand, 41100698 - 41100869
Alignment:
Q  7 catataaagaaggatcagtacagttcttaacaaattattgtattattatgaaac----aattggaattgaaacaaacaaaactaattacctatgagccat 102  Q
    ||||| |||||||||||||||||||  |||||||||||| ||||||||||||||    || ||||||||||||||| |||||||||||||||||||||||    
T  41100698 catatcaagaaggatcagtacagttgataacaaattattatattattatgaaactgcaaactggaattgaaacaaagaaaactaattacctatgagccat 41100797  T
Q  103 atatttgagaagttcatctgttccaaaccccctaacagcaatgtcttctagttgaccgcaacttaggtcaat 174  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||| || |||| |||||||||||||||    
T  41100798 atatttgagaagttcatcggttccaaaccccctaacagcaatgtcttccagatgactgcaacttaggtcaat 41100869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 107; Significance: 3e-53; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 230 - 432
Target Start/End: Original strand, 1152915 - 1153117
Alignment:
Q  230 atgtgaatggtacgccacattagaggatccttgcaaatattccgccacaaaggacaaacattacgtgcaattgtcacaatttcaacagtatcaagtcttt 329  Q
    |||||||||||||||||||||||||||||||||||||| | || ||||| ||||||||||||||||||| |||| ||||||||||||||||| |||||||    
T  1152915 atgtgaatggtacgccacattagaggatccttgcaaatgtgccaccacagaggacaaacattacgtgcacttgttacaatttcaacagtatccagtcttt 1153014  T
Q  330 gaagtatgttcttcatcaggtctattggaagttcgagccaatttggctttgtcgtgctctcacctttagctttcttcgtacaggaccccttcatgctaca 429  Q
    |||| |||||| | |||| ||||||||||||||  ||||||||||| ||| | ||||||||| |||| ||||| | |  ||| |||| ||||||||||||    
T  1153015 gaaggatgttccttatcaagtctattggaagttgaagccaatttggatttcttgtgctctcaactttcgctttttccacacaagacctcttcatgctaca 1153114  T
Q  430 aac 432  Q
    |||    
T  1153115 aac 1153117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 236 - 376
Target Start/End: Original strand, 5569421 - 5569561
Alignment:
Q  236 atggtacgccacattagaggatccttgcaaatattccgccacaaaggacaaacattacgtgcaattgtcacaatttcaacagtatcaagtctttgaagta 335  Q
    |||||||||||||  ||||||||||||||||| |||| ||| | |||||| || | || |||| |||| || |  |||| ||||||||| |||||||| |    
T  5569421 atggtacgccacacaagaggatccttgcaaatgttccaccatagaggacacacttgacatgcacttgttactacatcaatagtatcaagcctttgaagga 5569520  T
Q  336 tgttcttcatcaggtctattggaagttcgagccaatttggc 376  Q
    |||||  | | | |||| |||||||| | ||||||||||||    
T  5569521 tgttcaccgtgatgtctcttggaagtgcaagccaatttggc 5569561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 242 - 324
Target Start/End: Original strand, 16955668 - 16955750
Alignment:
Q  242 cgccacattagaggatccttgcaaatattccgccacaaaggacaaacattacgtgcaattgtcacaatttcaacagtatcaag 324  Q
    |||||||| |||||||||||||||||||||| ||| ||||| || || | || | || |||| |||||||||| |||||||||    
T  16955668 cgccacatgagaggatccttgcaaatattccaccataaagggcacacttgacatacacttgtgacaatttcaatagtatcaag 16955750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 243 - 324
Target Start/End: Original strand, 16966187 - 16966268
Alignment:
Q  243 gccacattagaggatccttgcaaatattccgccacaaaggacaaacattacgtgcaattgtcacaatttcaacagtatcaag 324  Q
    |||||||  ||||||||||||||||||||| ||| |||||||| || | || | || |||| || ||||||| |||||||||    
T  16966187 gccacatgtgaggatccttgcaaatattccaccataaaggacacacttgacatacacttgtgactatttcaatagtatcaag 16966268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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