View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19192_low_30 (Length: 448)
Name: NF19192_low_30
Description: NF19192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19192_low_30 |
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Alignment Details
Target: chr5 (Bit Score: 351; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 19 - 438
Target Start/End: Original strand, 38398104 - 38398537
Alignment:
| Q |
19 |
gggagtgtgtgttttaaaacgatgagggaggggagtgtaatatctctatcttttagggatcgggagtgtaatttactcaaatcttta------------- |
105 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |
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| T |
38398104 |
gggagtgtgtgttttaaaacaatgagggaggggagtgtaatatctttatcttttagggatggggagtgtaatttactcaaatctttaaaatcgtgttttc |
38398203 |
T |
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| Q |
106 |
-ccaactcatgaaataatctataagatggacatacatgaaattaaagaataaataatactaccgaaacaaactcatctgccgacatagatatttacaact |
204 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38398204 |
accaactcatgaaataatctataacatggacatacatgaaattaaagaataaataaaactaccgaaacaaactcatctgccgacatagatatttacaact |
38398303 |
T |
|
| Q |
205 |
aaaaaattcactttttaacgtcattcacacgtgaaagttgttgctgcacaaccaaaacagatgcactactattaagatcaggtgaaacaagaaaatcacc |
304 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38398304 |
aaaaaattcactttttaacgtcattcacacgtgaaagttgttgttgcacaaccaaaacagatgcactactattaagatcaggtgaaacaagaaaatcacc |
38398403 |
T |
|
| Q |
305 |
aatggcaccaagttctggaaattcactccattctgctaatccatcagtttgaggagattgagtttcatgtcttctcccaactataaagaaatcatgttcg |
404 |
Q |
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||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38398404 |
aatagcaccgagttctggaaattcactccattctgctaatccatcagtttgaggagattgagtttcatgtcttctcccaactataaagaaatcatgttcg |
38398503 |
T |
|
| Q |
405 |
ttcacaatctcacgtagaaaagatgctgtctgtg |
438 |
Q |
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| T |
38398504 |
ttcacaatctcacgtagaaaagatgctgtttgtg |
38398537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 194 - 438
Target Start/End: Original strand, 38380664 - 38380908
Alignment:
| Q |
194 |
tatttacaactaaaaaattcactttttaacgtcattcacacgtgaaagttgttgctgcacaaccaaaacagatgcactactattaagatcaggtgaaaca |
293 |
Q |
| |
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|||| ||||||| ||||| ||| ||||| ||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| || |
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| T |
38380664 |
tattgacaactacaaaatccaccctttaaggtcattcgtgcgtgagagttgttgttgcacaaccaaaacagatgcactactattaagatcaggtgaagca |
38380763 |
T |
|
| Q |
294 |
agaaaatcaccaatggcaccaagttctggaaattcactccattctgctaatccatcagtttgaggagattgagtttcatgtcttctcccaactataaaga |
393 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38380764 |
agaaaatcaccaatagcaccaagttctggaaattcactccattctgctaatccatcagtttgaggagattgagtttcatgtcttctcccaactataaaga |
38380863 |
T |
|
| Q |
394 |
aatcatgttcgttcacaatctcacgtagaaaagatgctgtctgtg |
438 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
38380864 |
aatcatgttcgttcacaatctcacgtagaaaagatgctgtttgtg |
38380908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 199 - 438
Target Start/End: Original strand, 38389535 - 38389774
Alignment:
| Q |
199 |
acaactaaaaaattcactttttaacgtcattcacacgtgaaagttgttgctgcacaaccaaaacagatgcactactattaagatcaggtgaaacaagaaa |
298 |
Q |
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||||||| ||||| ||| |||||| |||||| | ||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| |
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| T |
38389535 |
acaactacaaaatccaccttttaaggtcatttgcgcgtgagagttgttgctgcacaaccaaaacagatgcattactattaagatcaggtgaagcaagaaa |
38389634 |
T |
|
| Q |
299 |
atcaccaatggcaccaagttctggaaattcactccattctgctaatccatcagtttgaggagattgagtttcatgtcttctcccaactataaagaaatca |
398 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
38389635 |
atcaccaatagcaccaagttctggaaattcactccattctgctaatccatcggtttgaggatattgagtttcatgtcttctcccaactataaagaaatca |
38389734 |
T |
|
| Q |
399 |
tgttcgttcacaatctcacgtagaaaagatgctgtctgtg |
438 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |||| |
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| T |
38389735 |
tgttcgttcacaatctcacgtagaaaagatgctgtttgtg |
38389774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 138 - 201
Target Start/End: Original strand, 38380470 - 38380533
Alignment:
| Q |
138 |
acatgaaattaaagaataaataatactaccgaaacaaactcatctgccgacatagatatttaca |
201 |
Q |
| |
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|||||||||| |||| || ||||||| ||||||||||||||||| ||||||||||||||||||| |
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| T |
38380470 |
acatgaaattgaagagtacataatacaaccgaaacaaactcatccgccgacatagatatttaca |
38380533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 44 - 73
Target Start/End: Complemental strand, 38397010 - 38396981
Alignment:
| Q |
44 |
gggaggggagtgtaatatctctatctttta |
73 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
38397010 |
gggaggggagtgtaatatctctatctttta |
38396981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 143; Significance: 6e-75; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 240 - 430
Target Start/End: Complemental strand, 37841549 - 37841359
Alignment:
| Q |
240 |
agttgttgctgcacaaccaaaacagatgcactactattaagatcaggtgaaacaagaaaatcaccaatggcaccaagttctggaaattcactccattctg |
339 |
Q |
| |
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|||||||| || |||||||||||||||||||||||||||||||| |||||| |||||||||||||||| || |||||||||||||||||||||||||||| |
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| T |
37841549 |
agttgttgttgaacaaccaaaacagatgcactactattaagatcgggtgaagcaagaaaatcaccaatagctccaagttctggaaattcactccattctg |
37841450 |
T |
|
| Q |
340 |
ctaatccatcagtttgaggagattgagtttcatgtcttctcccaactataaagaaatcatgttcgttcacaatctcacgtagaaaagatgc |
430 |
Q |
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| T |
37841449 |
ccaatccatctgtttgaggagattgagtttcatgtcttctcccaactataaaaaaatcatgttcattcattatctcacgtagaaaagatgc |
37841359 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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