View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19192_low_31 (Length: 447)
Name: NF19192_low_31
Description: NF19192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19192_low_31 |
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Alignment Details
Target: chr1 (Bit Score: 309; Significance: 1e-174; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 9 - 379
Target Start/End: Original strand, 33453201 - 33453568
Alignment:
| Q |
9 |
agcacagagcattgttctttagaagatcctcaaaataacatgtgagatgaaatttgcagttgaaccaactttatataatctgtgaaaggggcacattcat |
108 |
Q |
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| T |
33453201 |
agcatagagcattgttctttagaagatcctcaaaataacatgtgagatgaaatttgaagttgaaccaactttatataatctgtgaaa------cattcat |
33453294 |
T |
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| Q |
109 |
tatccatgacataatttgataacactgtgagaggtaacttaacaactcatttaaattccaaagatcaactaagtcatagagaacaaaatgaaaagtagga |
208 |
Q |
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| T |
33453295 |
tatccatgacataatttgataacactgtgagaagtaacttaacaactcatttaaattccaaagaccaactaagtcatagagaacaaaatgaaaagtagga |
33453394 |
T |
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| Q |
209 |
ataatccaactccaatatggccaacaaattaccatgaattaacacaaaaatgggagattttgattttccattccaaaagtgtgaagactattctgtccta |
308 |
Q |
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| T |
33453395 |
ataatccaactccaatatggccaacaaattaccatgaattaacacaaaaatgggagattttgattttccattccaaaagtgtgaagactattctatccta |
33453494 |
T |
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| Q |
309 |
ggccttcttg---atagcaactgatgaccttgctttcagattcagaaagattgccctgatgcaacaaagtaaat |
379 |
Q |
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| T |
33453495 |
ggccttcttgataatagcaactgatgaccttgctttcagatttagaaagattgccctgatgcaagaaagtaaat |
33453568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 375 - 431
Target Start/End: Original strand, 33453587 - 33453643
Alignment:
| Q |
375 |
taaataattcatactgcacatgttgcccatcaagaaaagcttactaacatgcatagt |
431 |
Q |
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| T |
33453587 |
taaataattcatactgcacatgttgcccatcaagaaaagcttactaacatgcatagt |
33453643 |
T |
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