View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19192_low_36 (Length: 408)
Name: NF19192_low_36
Description: NF19192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19192_low_36 |
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Alignment Details
Target: chr8 (Bit Score: 285; Significance: 1e-159; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 60 - 392
Target Start/End: Original strand, 34712209 - 34712542
Alignment:
| Q |
60 |
tatggtaataactttcatcccgttatctaaatcttgatcacatgttgtacttctacagaatatttcattcgatcatttagcttaattgtagtttcaactc |
159 |
Q |
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| T |
34712209 |
tatggtaataactttcatcccgttatctaaatcttgatcacatgttgtacttctacagaatatttcattcgatcatttagcttaattgtggtttcaactc |
34712308 |
T |
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| Q |
160 |
agtttttgtttacatcatcctactaaccttcattttctaaccacttctaggatgatgttaattttgaga-nnnnnnnagcagtagaggatataattttta |
258 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | ||||||||||||||||||||| |
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| T |
34712309 |
agtttttgtttacatcatcctactaaccttcattttctaaccacttctaagatgatgttaattttgagattttttttaccagtagaggatataattttta |
34712408 |
T |
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| Q |
259 |
ttttgatgaagtctaaatgttctttcgtagagaatataattcttattttgatgtagtttgaatgtcttttcaaatgccaaacaagtagttatccattttg |
358 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34712409 |
ttttgatgaagtctgaatgttctttcgtagagaatataattcttattttgatgcagtttgaatgtcttttcaaatgccaaacaagtagttatccattttg |
34712508 |
T |
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| Q |
359 |
aatgactagcttctaaactatgttatgtggttat |
392 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
34712509 |
aatgactagcttctaaactatgttatgtggttat |
34712542 |
T |
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