View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19192_low_38 (Length: 400)

Name: NF19192_low_38
Description: NF19192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19192_low_38
NF19192_low_38
[»] chr7 (14 HSPs)
chr7 (1-384)||(6093954-6094337)
chr7 (72-160)||(6088796-6088884)
chr7 (184-296)||(6237053-6237165)
chr7 (184-296)||(6207757-6207869)
chr7 (184-296)||(6234175-6234287)
chr7 (100-160)||(6105970-6106030)
chr7 (184-275)||(6088681-6088772)
chr7 (66-160)||(6234320-6234414)
chr7 (184-296)||(6247037-6247149)
chr7 (85-160)||(6180352-6180427)
chr7 (85-158)||(6247175-6247248)
chr7 (100-160)||(6207902-6207962)
chr7 (216-296)||(6105810-6105890)
chr7 (100-160)||(6237198-6237258)


Alignment Details
Target: chr7 (Bit Score: 368; Significance: 0; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 1 - 384
Target Start/End: Complemental strand, 6094337 - 6093954
Alignment:
Q  1 gatgatattcatcagtggaaaaatgaatggaataaacttgagcagttggaaatgggagatcatgagatgggagaagttttcatggtattaaaacgcagtt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  6094337 gatgatattcatcagtggaaaaatgaatggaataaacttgagcagttggaaatgggagatcatgagatgggagaagttttcaaggtattaaaacgcagtt 6094238  T
Q  101 atgataatttgattgataaaaacttgcaaaactgctttttgtattgtgcactattatctagcccttcaatacgcaataaaaaagagttgatcttgaagat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6094237 atgataatttgattgataaaaacttgcaaaactgctttttgtattgtgcactattatctagcccttcaatacgcaataaaaaagagttgatcttgaagat 6094138  T
Q  201 tgttgacaatggagtgataaatgaaaataggtgtttggaggaaatatttaatgaagcgaataccatattggataaactcgaatctcattctttgataaat 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||    
T  6094137 tgttgacaatggagtgataaatgaaaataggtgtttggaggaaatatttaatgaagggaataccgtattggataaactcgaatctcattctttgataaat 6094038  T
Q  301 gacatgtttggaggaagtgtggtatctacacatcgcttgatgatagatatggcatgttatattttgaaagagagtgggaggaat 384  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  6094037 gacatgtttggaggaagtgtggtatctacacatcgcttgatgatagatatggcatgttatatttttaaagagagtgggaggaat 6093954  T

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Target: chr7; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 72 - 160
Target Start/End: Complemental strand, 6088884 - 6088796
Alignment:
Q  72 agaagttttcatggtattaaaacgcagttatgataatttgattgataaaaacttgcaaaactgctttttgtattgtgcactattatcta 160  Q
    |||||| |||| |||||||| ||| ||||||||||||||||| ||  || ||||||| ||||| |||||||||||||||||||||||||    
T  6088884 agaagtcttcaaggtattaagacgtagttatgataatttgatagaagaagacttgcagaactgttttttgtattgtgcactattatcta 6088796  T

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Target: chr7; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 184 - 296
Target Start/End: Complemental strand, 6237165 - 6237053
Alignment:
Q  184 gagttgatcttgaagattgttgacaatggagtgataaatgaaaataggtgtttggaggaaatatttaatgaagcgaataccatattggataaactcgaat 283  Q
    ||||||||| ||||| | ||||||||||||   |||||||| |||| || |||||| ||||||||| |||||| ||||||||||||| |||| || ||||    
T  6237165 gagttgatcatgaagctagttgacaatggacaaataaatgagaatatgtctttggaagaaatatttgatgaagggaataccatattgaataagcttgaat 6237066  T
Q  284 ctcattctttgat 296  Q
    | |||||||||||    
T  6237065 cccattctttgat 6237053  T

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Target: chr7; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 184 - 296
Target Start/End: Complemental strand, 6207869 - 6207757
Alignment:
Q  184 gagttgatcttgaagattgttgacaatggagtgataaatgaaaataggtgtttggaggaaatatttaatgaagcgaataccatattggataaactcgaat 283  Q
    ||||||||| ||||| | ||||||||||||  ||||||||| |||| || | |||| ||||||||| |||||| |||||||||||||  ||| || ||||    
T  6207869 gagttgatcatgaagctagttgacaatggacagataaatgagaatatgtctctggaagaaatatttgatgaagggaataccatattgagtaagcttgaat 6207770  T
Q  284 ctcattctttgat 296  Q
    | |||||||||||    
T  6207769 cccattctttgat 6207757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 184 - 296
Target Start/End: Complemental strand, 6234287 - 6234175
Alignment:
Q  184 gagttgatcttgaagattgttgacaatggagtgataaatgaaaataggtgtttggaggaaatatttaatgaagcgaataccatattggataaactcgaat 283  Q
    ||||||||| ||||| | ||||||||||||  ||||||||| |||| || | |||| ||||||||| |||||| |||||||||||||  ||| || ||||    
T  6234287 gagttgatcatgaagctagttgacaatggacagataaatgagaatatgtctctggaagaaatatttgatgaagggaataccatattgagtaagcttgaat 6234188  T
Q  284 ctcattctttgat 296  Q
    | |||||||||||    
T  6234187 cccattctttgat 6234175  T

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Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 100 - 160
Target Start/End: Complemental strand, 6106030 - 6105970
Alignment:
Q  100 tatgataatttgattgataaaaacttgcaaaactgctttttgtattgtgcactattatcta 160  Q
    |||||||||||||| || || |||||||||||||| ||||||||||||||| |||||||||    
T  6106030 tatgataatttgatggagaagaacttgcaaaactgttttttgtattgtgcattattatcta 6105970  T

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Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 184 - 275
Target Start/End: Complemental strand, 6088772 - 6088681
Alignment:
Q  184 gagttgatcttgaagattgttgacaatggagtgataaatgaaaataggtgtttggaggaaatatttaatgaagcgaataccatattggataa 275  Q
    ||||||||| ||||| |||||||||||  | |||||||||  |||| ||||||||| ||||||||| |||| | |||||||||||| |||||    
T  6088772 gagttgatcatgaagcttgttgacaataaactgataaatgggaataagtgtttggaagaaatatttgatgatgggaataccatatttgataa 6088681  T

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Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 66 - 160
Target Start/End: Complemental strand, 6234414 - 6234320
Alignment:
Q  66 gatgggagaagttttcatggtattaaaacgcagttatgataatttgattgataaaaacttgcaaaactgctttttgtattgtgcactattatcta 160  Q
    ||||| |||||| ||||  ||||||||| | || |||||||||||||| || ||| ||||||||||||| ||||||||||| ||| |||| ||||    
T  6234414 gatggaagaagtcttcaaagtattaaaatgtagctatgataatttgatggaaaaagacttgcaaaactgttttttgtattgcgcattattttcta 6234320  T

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Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 184 - 296
Target Start/End: Complemental strand, 6247149 - 6247037
Alignment:
Q  184 gagttgatcttgaagattgttgacaatggagtgataaatgaaaataggtgtttggaggaaatatttaatgaagcgaataccatattggataaactcgaat 283  Q
    ||||||||| ||||| | |||||||||||    |||||||  | || ||||||||| |||||||||  ||||| ||||||||||||| |||| || ||||    
T  6247149 gagttgatcatgaagttagttgacaatgggcaaataaatgggagtatgtgtttggaagaaatatttgttgaagggaataccatattgaataagcttgaat 6247050  T
Q  284 ctcattctttgat 296  Q
    | |||||||||||    
T  6247049 cccattctttgat 6247037  T

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Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 85 - 160
Target Start/End: Complemental strand, 6180427 - 6180352
Alignment:
Q  85 gtattaaaacgcagttatgataatttgattgataaaaacttgcaaaactgctttttgtattgtgcactattatcta 160  Q
    ||||||||||| |||| |||||||||||| || || ||| |||||||||| ||||||||||| ||| |||| ||||    
T  6180427 gtattaaaacgtagttttgataatttgatggaaaagaacatgcaaaactgttttttgtattgcgcattattttcta 6180352  T

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Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 85 - 158
Target Start/End: Complemental strand, 6247248 - 6247175
Alignment:
Q  85 gtattaaaacgcagttatgataatttgattgataaaaacttgcaaaactgctttttgtattgtgcactattatc 158  Q
    ||||||||||| |||| ||||||||| || || || ||| ||||||| || ||||||||||||||| |||||||    
T  6247248 gtattaaaacgtagttttgataatttaatggaaaagaacctgcaaaattgttttttgtattgtgcattattatc 6247175  T

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Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 100 - 160
Target Start/End: Complemental strand, 6207962 - 6207902
Alignment:
Q  100 tatgataatttgattgataaaaacttgcaaaactgctttttgtattgtgcactattatcta 160  Q
    |||||||||||||| || ||| ||||||||||||| ||||||||||| ||| |||| ||||    
T  6207962 tatgataatttgatggaaaaagacttgcaaaactgttttttgtattgcgcattattttcta 6207902  T

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Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 216 - 296
Target Start/End: Complemental strand, 6105890 - 6105810
Alignment:
Q  216 gataaatgaaaataggtgtttggaggaaatatttaatgaagcgaataccatattggataaactcgaatctcattctttgat 296  Q
    ||||||||| | || ||||||||| |||||||||  ||||| ||||||||||||| | || ||  |||| |||||||||||    
T  6105890 gataaatgatagtatgtgtttggaagaaatatttgttgaagggaataccatattgaaaaagcttaaatcccattctttgat 6105810  T

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Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 100 - 160
Target Start/End: Complemental strand, 6237258 - 6237198
Alignment:
Q  100 tatgataatttgattgataaaaacttgcaaaactgctttttgtattgtgcactattatcta 160  Q
    |||||||||||||| || ||| ||||||| ||||| ||||||||||| ||| |||| ||||    
T  6237258 tatgataatttgatggaaaaagacttgcagaactgttttttgtattgcgcattattttcta 6237198  T

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