View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19192_low_4 (Length: 727)

Name: NF19192_low_4
Description: NF19192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19192_low_4
NF19192_low_4
[»] chr1 (8 HSPs)
chr1 (295-709)||(41456906-41457319)
chr1 (26-297)||(41457431-41457702)
chr1 (434-512)||(15174584-15174661)
chr1 (434-503)||(34548059-34548128)
chr1 (431-491)||(46840558-46840618)
chr1 (431-498)||(1851478-1851545)
chr1 (609-645)||(26721265-26721301)
chr1 (434-492)||(50817257-50817315)
[»] chr2 (8 HSPs)
chr2 (473-705)||(29895140-29895363)
chr2 (434-494)||(33036308-33036368)
chr2 (434-493)||(45702530-45702589)
chr2 (434-493)||(45469505-45469564)
chr2 (443-532)||(13353190-13353280)
chr2 (431-497)||(29045032-29045098)
chr2 (604-645)||(1380714-1380755)
chr2 (431-492)||(18713064-18713125)
[»] scaffold0015 (1 HSPs)
scaffold0015 (427-503)||(5962-6038)
[»] chr6 (9 HSPs)
chr6 (434-542)||(12913550-12913657)
chr6 (434-519)||(16478919-16479003)
chr6 (607-645)||(17873296-17873334)
chr6 (604-645)||(649540-649581)
chr6 (604-645)||(11060329-11060370)
chr6 (434-519)||(12608198-12608283)
chr6 (604-645)||(17078657-17078698)
chr6 (604-645)||(18050916-18050957)
chr6 (434-519)||(18488398-18488482)
[»] chr4 (9 HSPs)
chr4 (434-542)||(37871949-37872055)
chr4 (434-508)||(17188619-17188693)
chr4 (604-645)||(10562800-10562841)
chr4 (434-494)||(18871012-18871072)
chr4 (434-493)||(39867010-39867069)
chr4 (434-492)||(51072015-51072073)
chr4 (430-491)||(17402540-17402601)
chr4 (604-645)||(20396214-20396255)
chr4 (431-484)||(23805198-23805251)
[»] chr7 (6 HSPs)
chr7 (434-511)||(9601512-9601589)
chr7 (434-511)||(9829083-9829160)
chr7 (431-508)||(19293419-19293496)
chr7 (434-493)||(38430422-38430481)
chr7 (434-493)||(7288129-7288188)
chr7 (434-492)||(17195273-17195331)
[»] chr5 (2 HSPs)
chr5 (434-519)||(21823907-21823991)
chr5 (434-493)||(11978977-11979036)
[»] chr3 (5 HSPs)
chr3 (431-538)||(27482535-27482641)
chr3 (431-508)||(17914434-17914511)
chr3 (604-645)||(50544855-50544896)
chr3 (440-492)||(19566184-19566236)
chr3 (434-491)||(30827877-30827934)
[»] chr8 (3 HSPs)
chr8 (434-492)||(1010748-1010806)
chr8 (431-492)||(14005785-14005846)
chr8 (434-503)||(13091118-13091187)
[»] scaffold0179 (2 HSPs)
scaffold0179 (609-644)||(8165-8200)
scaffold0179 (609-644)||(13099-13134)
[»] scaffold0309 (1 HSPs)
scaffold0309 (434-508)||(583-657)
[»] scaffold0155 (1 HSPs)
scaffold0155 (434-508)||(32933-33007)
[»] scaffold0153 (1 HSPs)
scaffold0153 (434-519)||(23624-23709)
[»] scaffold0007 (1 HSPs)
scaffold0007 (604-645)||(182747-182788)


Alignment Details
Target: chr1 (Bit Score: 319; Significance: 1e-180; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 295 - 709
Target Start/End: Complemental strand, 41457319 - 41456906
Alignment:
Q  295 ggcgggttcttgactgcggagattatctcttactagaccgaattaagaagctcttgttgccttggaagagtcgtcatttgtctgtgggaggatcgtttga 394  Q
    ||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| | |||||||||||    
T  41457319 ggcgggttcttgacttcggagattatctcttacaagaccgaattaagaagctcttgttgccttggaagagtcatcatttgtctgtgcggggatcgtttga 41457220  T
Q  395 tactttttgaaatatgtcctatcttcactatgggattattttctctccttcttcaaggctcccacagatatcatatcttctatcgaatctttatttaaat 494  Q
    |||||||||||||||||||| ||||  |||  | |||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||    
T  41457219 tactttttgaaatatgtcctgtctttgctaccgaattattttctctccttcttcaaggttcccatagatatcatatcttctatcgaatctttatttaaat 41457120  T
Q  495 gtttcttttgggggtgggtgtgaggaaattagaaaaattccatggattggaggggatacaatttgattagaaaaggagaacggaggttaggggtttagaa 594  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||| ||||||    
T  41457119 gtttcttttgggggtgggtgtgaggaaattaggaaaattccatggattggaggggatac-atttgattggaaaaggaaaacggaggttagggggttagaa 41457021  T
Q  595 aaattaggaaatttaatttggttttgttagaaaagtggtgttggaggatgcacgtggataaagatagtttgtggtttaaggttcttacaacaagatatgg 694  Q
    |||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||    
T  41457020 aaattagggaatttaatttggctttgttagaaaagtggtgttggaggatgcacgtggataaagatagtttgtggtttaaggttcttgcatcaagatatgg 41456921  T
Q  695 tttggagggagaagg 709  Q
    ||||| |||||||||    
T  41456920 tttggtgggagaagg 41456906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 26 - 297
Target Start/End: Complemental strand, 41457702 - 41457431
Alignment:
Q  26 tatttagttgaaattttgtccaaaaacattagttgaaaagttctgttcaatatcatggacaggtcgacgcataagataaagtgttgaaaagttaaaacac 125  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  41457702 tatttagttgaaattttgtccaaaaacattagttgaaaagttctgttcaatataatggacaggtcgacgcataagataaagtgttgaaaagttaaaacac 41457603  T
Q  126 ggttgcgcaattcaattgcaattgcaattagtgcttactgaatcatttatttttagtggcaaccacacggcattgtatccttttaccaacatagcctcat 225  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  41457602 ggttgcgcaattcaattgcaattgcaattggtgcttactgaatcatttatttttagtggcaaccacacggcattgtatccttttactaacatagcctcat 41457503  T
Q  226 caaagacattacaaagcgaattgcatccttgtatctgaacgtaatttactgcatggggtagagagaggcggc 297  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41457502 caaagacattacaaagcgaattgcatccttgtatctgaacgtaatttactgcatggggtagagagaggcggc 41457431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 434 - 512
Target Start/End: Original strand, 15174584 - 15174661
Alignment:
Q  434 tttctctccttcttcaaggctcccacagatatcatatcttctatcgaatctttatttaaatgtttcttttgggggtggg 512  Q
    ||||| |||||||||||||| ||||||| ||| || ||||||||||||||||||||||||| ||| |||||||||||||    
T  15174584 tttctttccttcttcaaggcccccacaggtataatttcttctatcgaatctttatttaaat-ttttttttgggggtggg 15174661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 434 - 503
Target Start/End: Original strand, 34548059 - 34548128
Alignment:
Q  434 tttctctccttcttcaaggctcccacagatatcatatcttctatcgaatctttatttaaatgtttctttt 503  Q
    ||||| ||||||||||| |||||| ||| |||||| |||||||| |||||||||||||| ||||| ||||    
T  34548059 tttctttccttcttcaaagctcccgcaggtatcatttcttctattgaatctttatttaactgtttttttt 34548128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 431 - 491
Target Start/End: Original strand, 46840558 - 46840618
Alignment:
Q  431 tattttctctccttcttcaaggctcccacagatatcatatcttctatcgaatctttattta 491  Q
    ||||||||||| ||||||||||||||||||  |||||| |||||  |||||||||||||||    
T  46840558 tattttctctctttcttcaaggctcccacatgtatcatttcttcggtcgaatctttattta 46840618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 431 - 498
Target Start/End: Original strand, 1851478 - 1851545
Alignment:
Q  431 tattttctctccttcttcaaggctcccacagatatcatatcttctatcgaatctttatttaaatgttt 498  Q
    |||||| | ||||||||||||||| || |||||||||| ||||||||||||||| | ||||| |||||    
T  1851478 tattttttttccttcttcaaggcttccgcagatatcatctcttctatcgaatctatttttaattgttt 1851545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 609 - 645
Target Start/End: Complemental strand, 26721301 - 26721265
Alignment:
Q  609 aatttggttttgttagaaaagtggtgttggaggatgc 645  Q
    ||||||| |||||||||||||||||||||||||||||    
T  26721301 aatttggctttgttagaaaagtggtgttggaggatgc 26721265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 434 - 492
Target Start/End: Original strand, 50817257 - 50817315
Alignment:
Q  434 tttctctccttcttcaaggctcccacagatatcatatcttctatcgaatctttatttaa 492  Q
    ||||| |||||||||||||| ||| ||| ||| || ||||| |||||||||||||||||    
T  50817257 tttctttccttcttcaaggcccccgcaggtataatttcttccatcgaatctttatttaa 50817315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 3e-25; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 473 - 705
Target Start/End: Original strand, 29895140 - 29895363
Alignment:
Q  473 tctatcgaatctttatttaaatgtttcttttgggggtgggtgtgaggaaattagaaaaattccatggattggaggggatacaatttgattagaaaaggag 572  Q
    |||||||||||||||||||||| ||||||| |||||||||||||| ||||||        ||| |  ||| || ||| ||||||||  ||| || || ||    
T  29895140 tctatcgaatctttatttaaatctttcttt-gggggtgggtgtgaagaaatt--------tccttatattagacggggtacaattttcttataatagaag 29895230  T
Q  573 aacggaggttaggggtttagaaaaattaggaaatttaatttggttttgttagaaaagtggtgttggaggatgcacgtggataaagatagtttgtggttta 672  Q
    |||  ||||| |||| |||| | ||| | | |||||||||||| ||||||||  |||||||||||||||||| | ||| | || |||||||| |||||||    
T  29895231 aacaaaggtttgggggttagtagaataaaggaatttaatttggctttgttaggtaagtggtgttggaggatgtatgtgtagaaggatagtttatggttta 29895330  T
Q  673 aggttcttacaacaagatatggtttggagggag 705  Q
    |||||||| || ||||||||| |||||||||||    
T  29895331 aggttcttgcagcaagatatgatttggagggag 29895363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 434 - 494
Target Start/End: Complemental strand, 33036368 - 33036308
Alignment:
Q  434 tttctctccttcttcaaggctcccacagatatcatatcttctatcgaatctttatttaaat 494  Q
    ||||| |||||||||||||| ||||||| ||| || ||||| |||||||||||||||||||    
T  33036368 tttctttccttcttcaaggcccccacaggtataatttcttccatcgaatctttatttaaat 33036308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 434 - 493
Target Start/End: Complemental strand, 45702589 - 45702530
Alignment:
Q  434 tttctctccttcttcaaggctcccacagatatcatatcttctatcgaatctttatttaaa 493  Q
    ||||| ||||||||||||||||| |||| ||| || || |||||||||||||||||||||    
T  45702589 tttctttccttcttcaaggctcctacaggtataatttcctctatcgaatctttatttaaa 45702530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 434 - 493
Target Start/End: Complemental strand, 45469564 - 45469505
Alignment:
Q  434 tttctctccttcttcaaggctcccacagatatcatatcttctatcgaatctttatttaaa 493  Q
    ||||| ||||||||||||||||| |||| ||| || || ||||||||||||||| |||||    
T  45469564 tttctttccttcttcaaggctcctacaggtataatttcctctatcgaatctttagttaaa 45469505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 443 - 532
Target Start/End: Original strand, 13353190 - 13353280
Alignment:
Q  443 ttcttcaaggctcccacagatatcatatcttctatcgaatctttatttaaatg-tttcttttgggggtgggtgtgaggaaattagaaaaat 532  Q
    |||||||||||| || ||  |||||| |||||| | |||||||| |||||||| ||| |||| ||| |||| ||||||| |||||||||||    
T  13353190 ttcttcaaggctgcctcaagtatcatttcttctcttgaatctttttttaaatgttttttttttgggttgggggtgaggacattagaaaaat 13353280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 431 - 497
Target Start/End: Original strand, 29045032 - 29045098
Alignment:
Q  431 tattttctctccttcttcaaggctcccacagatatcatatcttctatcgaatctttatttaaatgtt 497  Q
    |||||||| ||||| ||||||||| || |||||||||| | ||||||||||||| | ||||| ||||    
T  29045032 tattttctttccttattcaaggctaccgcagatatcattttttctatcgaatctatttttaattgtt 29045098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 604 - 645
Target Start/End: Complemental strand, 1380755 - 1380714
Alignment:
Q  604 aatttaatttggttttgttagaaaagtggtgttggaggatgc 645  Q
    |||| ||||||| ||| |||||||||||||||||||||||||    
T  1380755 aattcaatttggatttattagaaaagtggtgttggaggatgc 1380714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 431 - 492
Target Start/End: Original strand, 18713064 - 18713125
Alignment:
Q  431 tattttctctccttcttcaaggctcccacagatatcatatcttctatcgaatctttatttaa 492  Q
    |||||||| |||||||||||||||| | || ||||||||||||   | ||||||||||||||    
T  18713064 tattttctttccttcttcaaggctctctcatatatcatatctttccttgaatctttatttaa 18713125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 427 - 503
Target Start/End: Complemental strand, 6038 - 5962
Alignment:
Q  427 ggattattttctctccttcttcaaggctcccacagatatcatatcttctatcgaatctttatttaaatgtttctttt 503  Q
    |||||||||||| |||||||||||||| |||| || ||| || ||||||||| ||||||||||||||| ||| ||||    
T  6038 ggattattttctttccttcttcaaggcccccataggtataatttcttctatcaaatctttatttaaatttttttttt 5962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 434 - 542
Target Start/End: Complemental strand, 12913657 - 12913550
Alignment:
Q  434 tttctctccttcttcaaggctcccacagatatcatatcttctatcgaatctttatttaaatgtttcttttgggggtgggtgtgaggaaattagaaaaatt 533  Q
    ||||| ||||||||||| |||||| ||| |||||| |||||||| |||||||||||||| ||||| |||||| || || ||||||||  |||| ||||||    
T  12913657 tttctttccttcttcaaagctcccgcaggtatcatttcttctattgaatctttatttaactgttttttttggcgg-ggttgtgaggaggttaggaaaatt 12913559  T
Q  534 ccatggatt 542  Q
     | ||||||    
T  12913558 tcttggatt 12913550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 434 - 519
Target Start/End: Complemental strand, 16479003 - 16478919
Alignment:
Q  434 tttctctccttcttcaaggctcccacagatatcatatcttctatcgaatctttatttaaatgtttcttttgggggtgggtgtgagg 519  Q
    ||||| |||||||||||||| || |||| |||||| ||||||||||||||| | ||||||   ||||||| |||||||||||||||    
T  16479003 tttctttccttcttcaaggcccctacaggtatcatctcttctatcgaatctatttttaaaaaattctttt-ggggtgggtgtgagg 16478919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 607 - 645
Target Start/End: Original strand, 17873296 - 17873334
Alignment:
Q  607 ttaatttggttttgttagaaaagtggtgttggaggatgc 645  Q
    ||||||||| |||||||| ||||||||||||||||||||    
T  17873296 ttaatttggctttgttaggaaagtggtgttggaggatgc 17873334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 604 - 645
Target Start/End: Original strand, 649540 - 649581
Alignment:
Q  604 aatttaatttggttttgttagaaaagtggtgttggaggatgc 645  Q
    |||||||||||| ||| |||| ||||||||||||||||||||    
T  649540 aatttaatttggctttattaggaaagtggtgttggaggatgc 649581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 604 - 645
Target Start/End: Original strand, 11060329 - 11060370
Alignment:
Q  604 aatttaatttggttttgttagaaaagtggtgttggaggatgc 645  Q
    |||||||| ||||||||||||  |||||||||||||||||||    
T  11060329 aatttaatgtggttttgttaggtaagtggtgttggaggatgc 11060370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 434 - 519
Target Start/End: Complemental strand, 12608283 - 12608198
Alignment:
Q  434 tttctctccttcttcaaggctcccacagatatcatatcttctatcgaatctttatttaaatgtttcttttgggggtgggtgtgagg 519  Q
    ||||| ||||| |||||||| || |||| ||| || || | |||||||||||||||||| |  || |||| |||||||||||||||    
T  12608283 tttctttcctttttcaaggcacctacaggtataatttcctttatcgaatctttatttaatttattttttttggggtgggtgtgagg 12608198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 604 - 645
Target Start/End: Original strand, 17078657 - 17078698
Alignment:
Q  604 aatttaatttggttttgttagaaaagtggtgttggaggatgc 645  Q
    |||||||||||| ||| |||| ||||||||||||||||||||    
T  17078657 aatttaatttggctttattaggaaagtggtgttggaggatgc 17078698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 604 - 645
Target Start/End: Original strand, 18050916 - 18050957
Alignment:
Q  604 aatttaatttggttttgttagaaaagtggtgttggaggatgc 645  Q
    ||||||| |||||||| |||| ||||||||||||||||||||    
T  18050916 aatttaacttggttttattaggaaagtggtgttggaggatgc 18050957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 434 - 519
Target Start/End: Original strand, 18488398 - 18488482
Alignment:
Q  434 tttctctccttcttcaaggctcccacagatatcatatcttctatcgaatctttatttaaatgtttcttttgggggtgggtgtgagg 519  Q
    ||||| |||||||||||||| || |||| |||||| || |||||||||||| | || |||   ||||||| |||||||||||||||    
T  18488398 tttctttccttcttcaaggcccctacaggtatcatctcctctatcgaatctattttaaaaaaattctttt-ggggtgggtgtgagg 18488482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 434 - 542
Target Start/End: Complemental strand, 37872055 - 37871949
Alignment:
Q  434 tttctctccttcttcaaggctcccacagatatcatatcttctatcgaatctttatttaaatgtttcttttgggggtgggtgtgaggaaattagaaaaatt 533  Q
    ||||| ||||||||||| |||||| ||| |||||| |||||||| |||||||||||||| ||||| ||||||||| || ||||||||  |||| ||||||    
T  37872055 tttctttccttcttcaaagctcccgcaggtatcatttcttctattgaatctttatttaactgttt-ttttggggg-ggttgtgaggaggttaggaaaatt 37871958  T
Q  534 ccatggatt 542  Q
     | ||||||    
T  37871957 tcttggatt 37871949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 434 - 508
Target Start/End: Complemental strand, 17188693 - 17188619
Alignment:
Q  434 tttctctccttcttcaaggctcccacagatatcatatcttctatcgaatctttatttaaatgtttcttttggggg 508  Q
    ||||| || ||||||||||| || |||| ||| || || |||||||||||||||||||||| ||| |||||||||    
T  17188693 tttctttctttcttcaaggcacctacaggtataatttcctctatcgaatctttatttaaattttttttttggggg 17188619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 604 - 645
Target Start/End: Original strand, 10562800 - 10562841
Alignment:
Q  604 aatttaatttggttttgttagaaaagtggtgttggaggatgc 645  Q
    |||||||||||| |||||||| ||||||||||||||||||||    
T  10562800 aatttaatttggctttgttaggaaagtggtgttggaggatgc 10562841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 434 - 494
Target Start/End: Complemental strand, 18871072 - 18871012
Alignment:
Q  434 tttctctccttcttcaaggctcccacagatatcatatcttctatcgaatctttatttaaat 494  Q
    ||||| |||||||||||||||||||||  ||| || || ||||| ||||||||||||||||    
T  18871072 tttctttccttcttcaaggctcccacaagtataatttcctctattgaatctttatttaaat 18871012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 434 - 493
Target Start/End: Original strand, 39867010 - 39867069
Alignment:
Q  434 tttctctccttcttcaaggctcccacagatatcatatcttctatcgaatctttatttaaa 493  Q
    ||||| |||||||||||||| || |||| ||| || || |||||||||||||||||||||    
T  39867010 tttctttccttcttcaaggcacctacaggtataatttcctctatcgaatctttatttaaa 39867069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 434 - 492
Target Start/End: Original strand, 51072015 - 51072073
Alignment:
Q  434 tttctctccttcttcaaggctcccacagatatcatatcttctatcgaatctttatttaa 492  Q
    ||||| |||||||||||||| ||||||| ||| || ||||| || ||||||||||||||    
T  51072015 tttctttccttcttcaaggcccccacaggtataatttcttccatagaatctttatttaa 51072073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 430 - 491
Target Start/End: Original strand, 17402540 - 17402601
Alignment:
Q  430 ttattttctctccttcttcaaggctcccacagatatcatatcttctatcgaatctttattta 491  Q
    ||||||||| || ||||||||||| ||| ||||||| || ||||| || |||||||||||||    
T  17402540 ttattttctttctttcttcaaggcccccccagatataatttcttccatagaatctttattta 17402601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 604 - 645
Target Start/End: Complemental strand, 20396255 - 20396214
Alignment:
Q  604 aatttaatttggttttgttagaaaagtggtgttggaggatgc 645  Q
    |||||||||||| ||| |||| ||||||||||||||||||||    
T  20396255 aatttaatttggctttattaggaaagtggtgttggaggatgc 20396214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 431 - 484
Target Start/End: Original strand, 23805198 - 23805251
Alignment:
Q  431 tattttctctccttcttcaaggctcccacagatatcatatcttctatcgaatct 484  Q
    |||||||| ||||||||||||||| |||||  |||||| |||||||| ||||||    
T  23805198 tattttctttccttcttcaaggcttccacatgtatcatttcttctattgaatct 23805251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000004; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 434 - 511
Target Start/End: Complemental strand, 9601589 - 9601512
Alignment:
Q  434 tttctctccttcttcaaggctcccacagatatcatatcttctatcgaatctttatttaaatgtttcttttgggggtgg 511  Q
    ||||| |||||||||||||| || |||| ||| || ||||| ||||||||||||||||||| ||| ||| ||||||||    
T  9601589 tttctttccttcttcaaggcccctacaggtataatttcttccatcgaatctttatttaaatttttttttagggggtgg 9601512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 434 - 511
Target Start/End: Complemental strand, 9829160 - 9829083
Alignment:
Q  434 tttctctccttcttcaaggctcccacagatatcatatcttctatcgaatctttatttaaatgtttcttttgggggtgg 511  Q
    ||||| |||||||||||||| || |||| ||| || ||||| ||||||||||||||||||| ||| ||| ||||||||    
T  9829160 tttctttccttcttcaaggcccctacaggtataatttcttccatcgaatctttatttaaatttttttttagggggtgg 9829083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 431 - 508
Target Start/End: Original strand, 19293419 - 19293496
Alignment:
Q  431 tattttctctccttcttcaaggctcccacagatatcatatcttctatcgaatctttatttaaatgtttcttttggggg 508  Q
    |||||||| ||||||||||||| |||||||| |||||| || | ||| |||||| | ||||| |||||||||||||||    
T  19293419 tattttctttccttcttcaagggtcccacaggtatcatttcctgtattgaatctatttttaattgtttcttttggggg 19293496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 434 - 493
Target Start/End: Original strand, 38430422 - 38430481
Alignment:
Q  434 tttctctccttcttcaaggctcccacagatatcatatcttctatcgaatctttatttaaa 493  Q
    ||||| |||||||||||||| ||||||| ||| || ||||||||||||||| ||||||||    
T  38430422 tttctttccttcttcaaggcccccacaggtataatttcttctatcgaatctctatttaaa 38430481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 434 - 493
Target Start/End: Complemental strand, 7288188 - 7288129
Alignment:
Q  434 tttctctccttcttcaaggctcccacagatatcatatcttctatcgaatctttatttaaa 493  Q
    ||||| |||||||||||||| ||||||| ||| || |||||||| |||||| ||||||||    
T  7288188 tttctttccttcttcaaggcacccacaggtataatttcttctattgaatctatatttaaa 7288129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 434 - 492
Target Start/End: Complemental strand, 17195331 - 17195273
Alignment:
Q  434 tttctctccttcttcaaggctcccacagatatcatatcttctatcgaatctttatttaa 492  Q
    ||||| ||||||||||| |||||  ||| |||||| |||||||| ||||||||||||||    
T  17195331 tttctttccttcttcaaagctcctgcaggtatcatttcttctattgaatctttatttaa 17195273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 434 - 519
Target Start/End: Original strand, 21823907 - 21823991
Alignment:
Q  434 tttctctccttcttcaaggctcccacagatatcatatcttctatcgaatctttatttaaatgtttcttttgggggtgggtgtgagg 519  Q
    ||||| |||||||||||||| || |||| |||||| ||||||||||||||| | ||||||   ||||||| |||||||||||||||    
T  21823907 tttctttccttcttcaaggcccctacaggtatcatctcttctatcgaatctatttttaaaaaattctttt-ggggtgggtgtgagg 21823991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 434 - 493
Target Start/End: Original strand, 11978977 - 11979036
Alignment:
Q  434 tttctctccttcttcaaggctcccacagatatcatatcttctatcgaatctttatttaaa 493  Q
    ||||| |||||||||| ||| ||||||  ||| || ||||||||||||||||||||||||    
T  11978977 tttctttccttcttcatggcacccacatgtataatttcttctatcgaatctttatttaaa 11979036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000007; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 431 - 538
Target Start/End: Original strand, 27482535 - 27482641
Alignment:
Q  431 tattttctctccttcttcaaggctcccacagatatcatatcttctatcgaatctttatttaaatgtttcttttgggggtgggtgtgaggaaattagaaaa 530  Q
    |||||||||||||||||| ||||| |||||  ||||||||| | | | ||| |||| || ||||||||||||| | ||||| || ||||||||||| |||    
T  27482535 tattttctctccttcttcgaggcttccacatgtatcatatcatgtcttgaa-cttttttaaaatgtttctttttgaggtggatgcgaggaaattaggaaa 27482633  T
Q  531 attccatg 538  Q
    ||| ||||    
T  27482634 atttcatg 27482641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 431 - 508
Target Start/End: Complemental strand, 17914511 - 17914434
Alignment:
Q  431 tattttctctccttcttcaaggctcccacagatatcatatcttctatcgaatctttatttaaatgtttcttttggggg 508  Q
    |||||||| ||||||||||| |||||| ||| |||||| || ||||| |||||| | ||||| ||||| |||||||||    
T  17914511 tattttctttccttcttcaaagctcccgcaggtatcatttcctctattgaatctatttttaattgttttttttggggg 17914434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 604 - 645
Target Start/End: Complemental strand, 50544896 - 50544855
Alignment:
Q  604 aatttaatttggttttgttagaaaagtggtgttggaggatgc 645  Q
    |||||||||||| |||||||| ||||||||||||||||||||    
T  50544896 aatttaatttggctttgttaggaaagtggtgttggaggatgc 50544855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 440 - 492
Target Start/End: Complemental strand, 19566236 - 19566184
Alignment:
Q  440 tccttcttcaaggctcccacagatatcatatcttctatcgaatctttatttaa 492  Q
    |||||||||||||||||| ||||||| || ||||||||||||| | |||||||    
T  19566236 tccttcttcaaggctcccgcagatataatttcttctatcgaatttatatttaa 19566184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 434 - 491
Target Start/End: Original strand, 30827877 - 30827934
Alignment:
Q  434 tttctctccttcttcaaggctcccacagatatcatatcttctatcgaatctttattta 491  Q
    ||||| |||||||||| ||| ||| ||| ||| || ||||||||||||||||||||||    
T  30827877 tttctttccttcttcagggcccccgcaggtataatttcttctatcgaatctttattta 30827934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 434 - 492
Target Start/End: Complemental strand, 1010806 - 1010748
Alignment:
Q  434 tttctctccttcttcaaggctcccacagatatcatatcttctatcgaatctttatttaa 492  Q
    ||||| |||||||||||||| ||| || |||| || |||||||||||||||||||||||    
T  1010806 tttctttccttcttcaaggcccccgcaaatataatttcttctatcgaatctttatttaa 1010748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 431 - 492
Target Start/End: Original strand, 14005785 - 14005846
Alignment:
Q  431 tattttctctccttcttcaaggctcccacagatatcatatcttctatcgaatctttatttaa 492  Q
    |||||||| ||||||||||| |||| ||||  |||||| || ||||||||||||||||||||    
T  14005785 tattttctttccttcttcaaagctctcacaagtatcatttcctctatcgaatctttatttaa 14005846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 434 - 503
Target Start/End: Complemental strand, 13091187 - 13091118
Alignment:
Q  434 tttctctccttcttcaaggctcccacagatatcatatcttctatcgaatctttatttaaatgtttctttt 503  Q
    ||||| ||||||||||| |||| | ||  |||||| |||||||| |||||||||||||| ||||| ||||    
T  13091187 tttctttccttcttcaaagctctcgcacgtatcatttcttctattgaatctttatttaactgtttttttt 13091118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0179 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: scaffold0179
Description:

Target: scaffold0179; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 609 - 644
Target Start/End: Complemental strand, 8200 - 8165
Alignment:
Q  609 aatttggttttgttagaaaagtggtgttggaggatg 644  Q
    ||||||| ||||||||||||||||||||||||||||    
T  8200 aatttggctttgttagaaaagtggtgttggaggatg 8165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0179; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 609 - 644
Target Start/End: Complemental strand, 13134 - 13099
Alignment:
Q  609 aatttggttttgttagaaaagtggtgttggaggatg 644  Q
    ||||||| ||||||||||||||||||||||||||||    
T  13134 aatttggctttgttagaaaagtggtgttggaggatg 13099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0309 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0309
Description:

Target: scaffold0309; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 434 - 508
Target Start/End: Original strand, 583 - 657
Alignment:
Q  434 tttctctccttcttcaaggctcccacagatatcatatcttctatcgaatctttatttaaatgtttcttttggggg 508  Q
    ||||| |||||||||||||| ||||||| ||| || || || ||||||||||||||| ||  ||| |||||||||    
T  583 tttctttccttcttcaaggcccccacaggtataatttcatccatcgaatctttattttaaatttttttttggggg 657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0155 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 434 - 508
Target Start/End: Complemental strand, 33007 - 32933
Alignment:
Q  434 tttctctccttcttcaaggctcccacagatatcatatcttctatcgaatctttatttaaatgtttcttttggggg 508  Q
    ||||| |||||||||||||| || |||  ||| || || |||||| ||||||||||||||| ||| |||||||||    
T  33007 tttctttccttcttcaaggcacctacatgtataatttcctctatcaaatctttatttaaattttttttttggggg 32933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0153 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0153
Description:

Target: scaffold0153; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 434 - 519
Target Start/End: Original strand, 23624 - 23709
Alignment:
Q  434 tttctctccttcttcaaggctcccacagatatcatatcttctatcgaatct-ttatttaaatgtttcttttgggggtgggtgtgagg 519  Q
    ||||| |||||||||||||| || |||| |||||| || |||||||||||| || ||||||   ||||||| |||||||||||||||    
T  23624 tttctttccttcttcaaggcccctacaggtatcatctcctctatcgaatctcttttttaaaaaattctttt-ggggtgggtgtgagg 23709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 604 - 645
Target Start/End: Complemental strand, 182788 - 182747
Alignment:
Q  604 aatttaatttggttttgttagaaaagtggtgttggaggatgc 645  Q
    |||||||||||| ||| |||| ||||||||||||||||||||    
T  182788 aatttaatttggctttattaggaaagtggtgttggaggatgc 182747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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