View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19192_low_41 (Length: 386)
Name: NF19192_low_41
Description: NF19192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19192_low_41 |
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Alignment Details
Target: chr8 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 369
Target Start/End: Original strand, 40404371 - 40404734
Alignment:
| Q |
1 |
gtaagtaaccattttgttttcttgtaaattaattgaacaaagtgaagtga-----taatttcctaaacgnnnnnnnnnnnnnnnnnnnttgcaggccaac |
95 |
Q |
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| T |
40404371 |
gtaagtaaccattttgttttcttgtaaattaattgaacaaagtgaagtgaagtgataatttactaaacgtatatatat----------ttgcaggccaac |
40404460 |
T |
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| Q |
96 |
tttttacgtaatcttcaagaagaaatctgctgaaggatttcaggcacttccttatgttgtggcacttttcagtgcaatgctttggatctactatgcattt |
195 |
Q |
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| T |
40404461 |
tttttacgtaatcttcaagaagaaatctgctgaaggatttcaggcacttccttatgttgtggcacttttcagtgcaatgctttggatctactatgcattt |
40404560 |
T |
|
| Q |
196 |
gtcaaaagagaatctgctcttcttctcatcaccattaacacttttggaattgttgttgaatcagcttacattataatgttcctaatttatgccccaaaga |
295 |
Q |
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| T |
40404561 |
gtcaaaagagaatctgctcttcttctcatcaccattaacacttttggaattgttgttgaatcagcttacattataatgttcctaatttatgccccaaaga |
40404660 |
T |
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| Q |
296 |
aacaaagggtatacatatttcttttaagctcataaataagtttacactaattttaaaattgtactaattaattt |
369 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
40404661 |
aacaaagggtatacatatttcttttaagctcataaataagtttacactaattttaaaattgtactaatttattt |
40404734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 85 - 202
Target Start/End: Original strand, 45317632 - 45317749
Alignment:
| Q |
85 |
tgcaggccaactttttacgtaatcttcaagaagaaatctgctgaaggatttcaggcacttccttatgttgtggcacttttcagtgcaatgctttggatct |
184 |
Q |
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| T |
45317632 |
tgcagaccaacattttaccgaatctacaagaagaaatctactgaagggtttcaatcagttccttatgttactgcattgttgagtgcaatgctttggatct |
45317731 |
T |
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| Q |
185 |
actatgcatttgtcaaaa |
202 |
Q |
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| T |
45317732 |
attatgcacatgtcaaaa |
45317749 |
T |
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