View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19192_low_43 (Length: 386)
Name: NF19192_low_43
Description: NF19192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19192_low_43 |
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Alignment Details
Target: chr5 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 18 - 381
Target Start/End: Original strand, 35501244 - 35501607
Alignment:
| Q |
18 |
ctccccaattgcgcccgctaacagaaagttgcttctcctttacagttattccaaaggtgttttggaaaaaactggtcaaacttacaacatcctgcaaaat |
117 |
Q |
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| T |
35501244 |
ctccccaattgcgcccactaacagaaagttgcttctcctttacagttattccaaaggtgttttggaaaaaactggtcaaacttacaacatcctgcaaaat |
35501343 |
T |
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| Q |
118 |
agaaaatatcaacataagaaatgatatgtgatgccaatctaagtcccagtcattaatatctatatctgtcaaaatgttaatcaaaggaacaaacataaga |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
35501344 |
agaaaatatcaacataagaaatgatatgtgatgccaatctaagtcccagtcattaatatctatatctgtcaaaatgttagtcaaaggaacaaacataaga |
35501443 |
T |
|
| Q |
218 |
aaacaaaccagatatttgaattccttagtctacaaatatatgtaattggacattcaggaggggcagaaagtaacctgatcacgaaatccagtgaatttgt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35501444 |
aaacaaaccagatatttgaattccttagtctacaaatatatgtaattggacattcaggaggggcagaaagtaacctgatcacgaaatccagtgaatttgt |
35501543 |
T |
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| Q |
318 |
agaacaacccatctttgatctgaacaccaagttgattactctttggaaccttcattcatctcac |
381 |
Q |
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| T |
35501544 |
agaacaacccatctttgatctgaacaccaagttgattactctttggaaccttcatccatgtcac |
35501607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 63; Significance: 3e-27; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 290 - 372
Target Start/End: Complemental strand, 7069935 - 7069853
Alignment:
| Q |
290 |
acctgatcacgaaatccagtgaatttgtagaacaacccatctttgatctgaacaccaagttgattactctttggaaccttcat |
372 |
Q |
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| T |
7069935 |
acctgatcacggaaaccagtgaatttgtagaacaacccatctttgatctgaacaccgagttgatttgtctttggaaccttcat |
7069853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 18 - 118
Target Start/End: Complemental strand, 7070223 - 7070123
Alignment:
| Q |
18 |
ctccccaattgcgcccgctaacagaaagttgcttctcctttacagttattccaaaggtgttttggaaaaaactggtcaaacttacaacatcctgcaaaat |
117 |
Q |
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|||||||||||||||| |||||||||||||||||||| ||||||| ||| |||||||||||||| ||||| ||||| ||||||||||||| |||||| |
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| T |
7070223 |
ctccccaattgcgcccagtaacagaaagttgcttctccccaacagttactccgaaggtgttttggaagaaacttgtcaagcttacaacatcctacaaaat |
7070124 |
T |
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| Q |
118 |
a |
118 |
Q |
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| T |
7070123 |
a |
7070123 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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