View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19192_low_45 (Length: 381)
Name: NF19192_low_45
Description: NF19192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19192_low_45 |
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Alignment Details
Target: chr3 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 15 - 362
Target Start/End: Original strand, 43453079 - 43453426
Alignment:
| Q |
15 |
agaatatcaggcttttaatacaggtcctgcttagcccattgtcttaaaagtgaagtgttacatttgcagatctagctggtgttgggaccatggcaaatga |
114 |
Q |
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| T |
43453079 |
agaaaatcaggcttttaatacaggtcctgcttagcccattgtcttaaaagtgaagtgttacatttgcagatctagctggtgttgggaccatggcaaatga |
43453178 |
T |
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| Q |
115 |
atcctacaaaatacttccagaaaggaacttcaattattcaatattacgtccacctaacataatgttaaccatttattctgctctttctgtgttcttctgc |
214 |
Q |
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| T |
43453179 |
atcctacaaaatacttccagaaaggaacttcaattattcaatattacgtccacctaacataatgttaaccatttattctgctctttctgtgttcttctgc |
43453278 |
T |
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| Q |
215 |
tcatccaagtggtacaatacaacttgattcaagttttataaacacttttgttattacttttcatgtatacaaatgttggtttaactaattaatatttggt |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43453279 |
tcatccaagtggtacaatacaacttgattcaagttttataaacacttttgttattacttttcatgtatacaaatgttggtttaactaattaatatttggt |
43453378 |
T |
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| Q |
315 |
gcatatatttaaaactattaatctaaatcaaatattcaagaacatttt |
362 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
43453379 |
gcatatatttaaaactattaagctaaatcaaatattcaagaacatttt |
43453426 |
T |
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