View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19192_low_48 (Length: 371)
Name: NF19192_low_48
Description: NF19192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19192_low_48 |
 | |
|
| [»] scaffold0014 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 304; Significance: 1e-171; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 1 - 354
Target Start/End: Original strand, 7806362 - 7806715
Alignment:
| Q |
1 |
atagataagttcagcatgcaaatcttctaggataggacaagcattgagaaaatttatgtaatcatcccgattttcaaaagaaactgatgtcagatttagg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7806362 |
atagataagttcagcatgcaaatcttctaggataggacaagcattgagaaaatttatgtaatcatcccgattttcaaaagaaactgatgtcagatttagg |
7806461 |
T |
|
| Q |
101 |
gttttgagtgatggaagatgaacacttgaagtatcctttccaacatataaactttgaagtttgagaacaacaagggtttgcgagacgaaaataacatgct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
7806462 |
gttttgagtgatggaagatgaacacttgaagtatcctttccaacatataaactttgaagtttgagaacaacaagagtttgcgagacgaaaataacatgct |
7806561 |
T |
|
| Q |
201 |
ttaaggtgtggaaaggcaaagtgagatgaatttcctctatatgaggnnnnnnngcctcttggagccaatttgtcacgttaaatctactattttctgggtg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7806562 |
ttaaggtgtggaaaggcaaagtgagatgaatttcctctatatgaggtttttttgcctcttggagccaatttgtcacgttaaatctactattttctgggtg |
7806661 |
T |
|
| Q |
301 |
gtatctaaagtcatacttgagggaaannnnnnngatgggttggttggttgaaag |
354 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| |||||||||||| |
|
|
| T |
7806662 |
gtatctaaagtcatacttgagggaaatttttttgatgggtttgttggttgaaag |
7806715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 10 - 155
Target Start/End: Complemental strand, 10415987 - 10415842
Alignment:
| Q |
10 |
ttcagcatgcaaatcttctaggataggacaagcattgagaaaatttatgtaatcatcccgattttcaaaagaaactgatgtcagatttagggttttgagt |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| ||| |||||||||||||| |
|
|
| T |
10415987 |
ttcagcatgcaaatcttctaggataggacaagcatgaagaaaatttatgtaatcattccgattttcaaaagaaactgatatcaagcttagggttttgagt |
10415888 |
T |
|
| Q |
110 |
gatggaagatgaacacttgaagtatcctttccaacatataaacttt |
155 |
Q |
| |
|
|| |||||||||||| ||||||||||||||||||||||| ||||| |
|
|
| T |
10415887 |
gacagaagatgaacacatgaagtatcctttccaacatatacacttt |
10415842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 13 - 193
Target Start/End: Original strand, 3255441 - 3255621
Alignment:
| Q |
13 |
agcatgcaaatcttctaggataggacaagcattgagaaaatttatgtaatcatcccgattttcaaaagaaactgatgtcagatttagggttttgagtgat |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||| ||||||| || |||||||||| |||| || || | |||||||||| |||||| |
|
|
| T |
3255441 |
agcatgcaaatcttctaggataggacaagcatagagaaaatttatataatcattccaattttcaaaataaacatattccaaagttagggtttttagtgat |
3255540 |
T |
|
| Q |
113 |
ggaagatgaacacttgaagtatcctttccaacatataaactttgaagtttgagaacaacaagggtttgcgagacgaaaata |
193 |
Q |
| |
|
||||||| ||||| ||||| ||| |||||||| ||| |||| |||||||||||||||||||||||| ||| ||||||| |
|
|
| T |
3255541 |
ggaagatcaacacaagaagtgtccgctccaacatttaacctttcaagtttgagaacaacaagggtttggaagatgaaaata |
3255621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 185
Target Start/End: Complemental strand, 7814553 - 7814380
Alignment:
| Q |
12 |
cagcatgcaaatcttctaggataggacaagcattgagaaaatttatgtaatcatcccgattttcaaaagaaactgatgtcagatttagggttttgagtga |
111 |
Q |
| |
|
|||||||||||||||||||| | ||||||||| |||||| ||||||||||| | ||||||||||| |||| | | | || ||| ||||||| || |
|
|
| T |
7814553 |
cagcatgcaaatcttctaggttgggacaagcagaaagaaaacctatgtaatcattctgattttcaaaataaacataacttaaatgcaggattttgagcga |
7814454 |
T |
|
| Q |
112 |
tggaagatgaacacttgaagtatcctttccaacatataaactttgaagtttgagaacaacaagggtttgcgaga |
185 |
Q |
| |
|
||||||| ||||| |||||||| ||||||| | |||| |||||||||||||||||||||||| |||| |
|
|
| T |
7814453 |
gggaagatcaacacaagaagtatcatttccaatgtgtaaatccataagtttgagaacaacaagggtttgagaga |
7814380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 102 - 195
Target Start/End: Complemental strand, 7871692 - 7871599
Alignment:
| Q |
102 |
ttttgagtgatggaagatgaacacttgaagtatcctttccaacatataaactttgaagtttgagaacaacaagggtttgcgagacgaaaataac |
195 |
Q |
| |
|
||||||| ||||||||||||||| ||||||||| || || || || || | |||||||||||||||||||||||| |||| ||||||||| |
|
|
| T |
7871692 |
ttttgagcaatggaagatgaacacatgaagtatcaattgaaaaatctatcctcttaagtttgagaacaacaagggtttgagagatgaaaataac |
7871599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 135
Target Start/End: Complemental strand, 7860476 - 7860354
Alignment:
| Q |
13 |
agcatgcaaatcttctaggataggacaagcattgagaaaatttatgtaatcatcccgattttcaaaagaaactgatgtcagatttagggttttgagtgat |
112 |
Q |
| |
|
|||||| |||||||| || |||||||||||| |||||||| |||||||||| ||||||| |||| ||| ||| ||| || | |||||||| ||| |
|
|
| T |
7860476 |
agcatgtaaatcttccagaataggacaagcagaaagaaaattgatgtaatcattccgatttgtaaaatgaacggatttcaaatgcaatgttttgagcgat |
7860377 |
T |
|
| Q |
113 |
ggaagatgaacacttgaagtatc |
135 |
Q |
| |
|
||||||| ||||| |||||||| |
|
|
| T |
7860376 |
ggaagatcaacacacgaagtatc |
7860354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 120; Significance: 3e-61; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 9 - 244
Target Start/End: Original strand, 19317226 - 19317461
Alignment:
| Q |
9 |
gttcagcatgcaaatcttctaggataggacaagcattgagaaaatttatgtaatcatcccgattttcaaaagaaactgatgtcagatttagggttttgag |
108 |
Q |
| |
|
|||| |||| ||||||||||| |||||||||||||| |||||||||| ||||| || || ||||| |||| ||||||||||||||||||||||||| || |
|
|
| T |
19317226 |
gttctgcatacaaatcttctaagataggacaagcataaagaaaatttacgtaattattccaattttgaaaataaactgatgtcagatttagggttttaag |
19317325 |
T |
|
| Q |
109 |
tgatggaagatgaacacttgaagtatcctttccaacatataaactttgaagtttgagaacaacaagggtttgcgagacgaaaataacatgctttaaggtg |
208 |
Q |
| |
|
||||||||||||||||| |||||| ||||||||||||||||||||| |||||| ||||||||||||||||| ||||| |||| | | || | ||||| |
|
|
| T |
19317326 |
tgatggaagatgaacacacgaagtaccctttccaacatataaactttcaagttttagaacaacaagggtttgagagacaaaaagatcgggcatcaaggta |
19317425 |
T |
|
| Q |
209 |
tggaaaggcaaagtgagatgaatttcctctatatga |
244 |
Q |
| |
|
||| |||||||| ||||||||||||| ||||||||| |
|
|
| T |
19317426 |
tgggaaggcaaactgagatgaatttcttctatatga |
19317461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 20 - 210
Target Start/End: Complemental strand, 14018187 - 14017997
Alignment:
| Q |
20 |
aaatcttctaggataggacaagcattgagaaaatttatgtaatcatcccgattttcaaaagaaactgatgtcagatttagggttttgagtgatggaagat |
119 |
Q |
| |
|
||||||||||||||||||||| ||| ||||||||||| ||||||| || ||||||||||||||| || || ||| |||||||||||||| ||||||| |
|
|
| T |
14018187 |
aaatcttctaggataggacaaccataaagaaaatttatataatcattccaattttcaaaagaaacatattccaaattcagggttttgagtgacggaagat |
14018088 |
T |
|
| Q |
120 |
gaacacttgaagtatcctttccaacatataaactttgaagtttgagaacaacaagggtttgcgagacgaaaataacatgctttaaggtgtg |
210 |
Q |
| |
|
||||| |||||||||||| ||| || ||| | |||||||||||||||||||| |||||| || | ||||| ||| |||| |||||||| |
|
|
| T |
14018087 |
caacacacgaagtatccttttcaatatctaaccgttgaagtttgagaacaacaaaggtttgggatatgaaaacaacgggcttcaaggtgtg |
14017997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 13 - 194
Target Start/End: Original strand, 37997164 - 37997345
Alignment:
| Q |
13 |
agcatgcaaatcttctaggataggacaagcattgagaaaatttatgtaatcatcccgattttcaaaagaaactgatgtcagatttagggttttgagtgat |
112 |
Q |
| |
|
|||||| |||||||| |||||||||||||| |||||||| |||||||| | | |||||| |||| | ||| || || || |||||||| || ||| |
|
|
| T |
37997164 |
agcatgaaaatcttcaaggataggacaagcggaaagaaaattaatgtaatccttctgatttttaaaatacactaattgcaaataaagggttttcagcgat |
37997263 |
T |
|
| Q |
113 |
ggaagatgaacacttgaagtatcctttccaacatataaactttgaagtttgagaacaacaagggtttgcgagacgaaaataa |
194 |
Q |
| |
|
||||||| ||||| ||||||| |||||||||| ||| |||| |||||||||||||||||||||||| |||| |||||||| |
|
|
| T |
37997264 |
ggaagatcaacacacaaagtatcatttccaacatttaaccttttaagtttgagaacaacaagggtttgggagatgaaaataa |
37997345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0014
Description:
Target: scaffold0014; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 55 - 170
Target Start/End: Original strand, 166485 - 166598
Alignment:
| Q |
55 |
tatgtaatcatcccgattttcaaaagaaactgatgtcagatttagggttttgagtgatggaagatgaacacttgaagtatcctttccaacatataaactt |
154 |
Q |
| |
|
||||||||||| | || ||| |||| |||||||||| | || || |||| |||||||||||||| ||||| ||||||| || |||||||||||| || |
|
|
| T |
166485 |
tatgtaatcattctgactttaaaaataaactgatgttaaatgtaaggtt--gagtgatggaagattaacacacaaagtatcattaccaacatataaattt |
166582 |
T |
|
| Q |
155 |
tgaagtttgagaacaa |
170 |
Q |
| |
|
| |||||||||||||| |
|
|
| T |
166583 |
tcaagtttgagaacaa |
166598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 124
Target Start/End: Complemental strand, 24112323 - 24112215
Alignment:
| Q |
16 |
atgcaaatcttctaggataggacaagcattgagaaaatttatgtaatcatcccgattttcaaaagaaactgatgtcagatttagggttttgagtgatgga |
115 |
Q |
| |
|
||||||||||| ||| |||||||||||||| |||| || ||| |||||| | |||||||| || |||| || ||| | |||| ||||||| |||||| |
|
|
| T |
24112323 |
atgcaaatcttgtagaataggacaagcattaagaagcttaatgaaatcattctgattttcacaacaaacatatttcaaacctaggattttgagagatgga |
24112224 |
T |
|
| Q |
116 |
agatgaaca |
124 |
Q |
| |
|
|||| |||| |
|
|
| T |
24112223 |
agatcaaca |
24112215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University