View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19192_low_50 (Length: 367)
Name: NF19192_low_50
Description: NF19192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19192_low_50 |
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Alignment Details
Target: chr5 (Bit Score: 162; Significance: 2e-86; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 23 - 267
Target Start/End: Complemental strand, 31961222 - 31960965
Alignment:
| Q |
23 |
tggcaatagtaggagagaatgagagaaaaacatgatttctttattttgtttagattagaagtaaaacggaaagtaaaacttgcttatggggagtcatact |
122 |
Q |
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| T |
31961222 |
tggcaatagtaggagagaatgagagaaaaacatgatttctttattttgtttagattagaagtaaaaaggaaagtaaaacttgcttatggggagtcatatt |
31961123 |
T |
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| Q |
123 |
gtttttggaacaaatagaaccatattatacataagctcgaatgctcaagttaaaattgtgtagac-------------ttttannnnnnnnaatcgagta |
209 |
Q |
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| T |
31961122 |
gtttttggaacaaatagaaccatattatacataagctcgaatgctcaagttaaaattgtgtagacttttttttatttttttttattttttaaatcgagta |
31961023 |
T |
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| Q |
210 |
ttatctgtgttcaactgcagaggttaatctattgagttggataagacctctaagaatg |
267 |
Q |
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| T |
31961022 |
ttatctgtgtccaactgcagaggttaatttattgagttgggtaaggcctctaagaatg |
31960965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 233 - 346
Target Start/End: Complemental strand, 31960960 - 31960844
Alignment:
| Q |
233 |
ttaatctattgagttggataagacctctaagaatga-aaaagctctctc--aagagaattgaacacccctacattcaccgttcgaatcaataaactatag |
329 |
Q |
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| T |
31960960 |
ttaatttattgagttgggtaaggtctctaagaatggcaaaagctctctctcaagagaattgaacacccctacattcacaattcaaattaataaactctag |
31960861 |
T |
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| Q |
330 |
ttaagttggaagagatc |
346 |
Q |
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| T |
31960860 |
ttaaattggaagagatc |
31960844 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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