View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19192_low_53 (Length: 352)
Name: NF19192_low_53
Description: NF19192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19192_low_53 |
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Alignment Details
Target: chr5 (Bit Score: 194; Significance: 1e-105; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 133 - 349
Target Start/End: Original strand, 32255763 - 32255980
Alignment:
| Q |
133 |
ctcttatagtttcaattgataatattttagaagatgaaaagattgatcaatcaatcacaagaagatgaaatccaactccacattatgattgaccttggaa |
232 |
Q |
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| T |
32255763 |
ctcttatagtttcaatttataatattttagaagatgaaaatattgatcaatcaatcacaagaagatgaaatccaactccacattatgattgaccttggaa |
32255862 |
T |
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| Q |
233 |
cag-ttaagtgtaacagcaataagattaattgggttctcagagacaaacaagagttcgttgataccgttgaaactgtcttctgcggtgcaagggaagggc |
331 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
32255863 |
caggttaagtgtaacagcaataagattaattgggttctcagagacaaacaagagttcgttgataccgttgaaactgtcttctgcagtgcaagggaagggc |
32255962 |
T |
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| Q |
332 |
gcggtcttctcatctatc |
349 |
Q |
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|||||||| ||||||||| |
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| T |
32255963 |
gcggtcttgtcatctatc |
32255980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 134 - 349
Target Start/End: Original strand, 32264815 - 32265026
Alignment:
| Q |
134 |
tcttatagtttcaattgataatattttagaagatgaaaagattgatcaatcaatcacaagaagatgaaatccaactccacattatgattgaccttggaac |
233 |
Q |
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| T |
32264815 |
tcttatagtttaaattaatcatattttaaaagatgaaaatattgatcaatca----cgagaagatgaaatccaactccacattatgattgaccttggaac |
32264910 |
T |
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| Q |
234 |
agttaagtgtaacagcaataagattaattgggttctcagagacaaacaagagttcgttgataccgttgaaactgtcttctgcggtgcaagggaagggcgc |
333 |
Q |
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| T |
32264911 |
aggtaagtgtaacagcaataagattaattgggttatcagagacaaacaagagttcgttgataccgttgaaactgtcttctgcggtgcaagggaagggcgc |
32265010 |
T |
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| Q |
334 |
ggtcttctcatctatc |
349 |
Q |
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|||||| ||||||||| |
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| T |
32265011 |
ggtcttgtcatctatc |
32265026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 242 - 346
Target Start/End: Original strand, 32250388 - 32250493
Alignment:
| Q |
242 |
gtaacagcaataagattaattgggttctca-gagacaaacaagagttcgttgataccgttgaaactgtcttctgcggtgcaagggaagggcgcggtcttc |
340 |
Q |
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|||||| ||||| ||||||||||| ||| | ||||||||||||||||||||||||||||||||||||||||| | ||| ||||| ||||| |||||||| |
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| T |
32250388 |
gtaacaacaatatgattaattgggctctgaagagacaaacaagagttcgttgataccgttgaaactgtcttccgtggttcaaggaaagggtgcggtcttg |
32250487 |
T |
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| Q |
341 |
tcatct |
346 |
Q |
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|||||| |
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| T |
32250488 |
tcatct |
32250493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 21 - 68
Target Start/End: Original strand, 32255583 - 32255630
Alignment:
| Q |
21 |
ccagactcatacaatggatgggaccatatacacatacttgataacctg |
68 |
Q |
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| T |
32255583 |
ccagattcatacaatggatgggaccatatacacatacttgataacctg |
32255630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 69; Significance: 7e-31; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 211 - 346
Target Start/End: Original strand, 28719541 - 28719670
Alignment:
| Q |
211 |
cacattatgattgaccttggaacagttaagtgtaacagcaataagattaattgggttctcagagacaaacaagagttcgttgataccgttgaaactgtct |
310 |
Q |
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||||||||||||||||||||||||| |||||| ||||||||||||||||| |||||||||||||||||||||| |||||| |||||||||||||| |
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| T |
28719541 |
cacattatgattgaccttggaacag------gtaacaacaataagattaattgggctctcagagacaaacaagagttcattgatatcgttgaaactgtct |
28719634 |
T |
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| Q |
311 |
tctgcggtgcaagggaagggcgcggtcttctcatct |
346 |
Q |
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|| ||||||||| |||| || |||||| |||||| |
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| T |
28719635 |
tccatggtgcaaggaaaggacgtggtcttgtcatct |
28719670 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 241 - 336
Target Start/End: Original strand, 23204840 - 23204935
Alignment:
| Q |
241 |
tgtaacagcaataagattaattgggttctcagagacaaacaagagttcgttgataccgttgaaactgtcttctgcggtgcaagggaagggcgcggt |
336 |
Q |
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||||||| ||||| |||||||||| |||||||||| ||||||||||| |||||| ||||||||||||||||| ||||||||| ||||||||||| |
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| T |
23204840 |
tgtaacaacaatatgattaattggactctcagagacgaacaagagttcattgatatggttgaaactgtcttctgtggtgcaaggaaagggcgcggt |
23204935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 64
Target Start/End: Original strand, 23203472 - 23203514
Alignment:
| Q |
22 |
cagactcatacaatggatgggaccatatacacatacttgataa |
64 |
Q |
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| T |
23203472 |
cagactcatacaatggaagggaccagctacacatacttgataa |
23203514 |
T |
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