View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19192_low_56 (Length: 337)
Name: NF19192_low_56
Description: NF19192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19192_low_56 |
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Alignment Details
Target: chr4 (Bit Score: 245; Significance: 1e-136; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 40 - 323
Target Start/End: Original strand, 31205061 - 31205345
Alignment:
| Q |
40 |
aaggacaacctatgtataattttatttgaaaatcgtacattattgtagtttccattagcaatcatacaaaataatagactcatgaattttccaacttaga |
139 |
Q |
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|||| ||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
31205061 |
aagggcaatctatgtataattttatttgaaaatcgtacattattgtagtttctattagcaatcatacaaaataatagactcatgaatttttcaacttaga |
31205160 |
T |
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| Q |
140 |
aaccgtacccttattttctaaaaactcaacgattgttacatgccatgtatgtattatctagcaatttgaaggtgcttcttgaattgatactgatttcact |
239 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31205161 |
aaccgtacccttattttctaaaaactcaaggattgttacatgccatgtatgtattatctagcaatttgaaggtgcttcttgaattgatactgatttcact |
31205260 |
T |
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| Q |
240 |
tgtgggtttcttctccaattcaatgtttgtgggtt-ccccgtcttctctcttctatgtgttgtcaacaatggtagtagtggtgtc |
323 |
Q |
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| T |
31205261 |
tgtgggtttcttctccaattcaatgttcatgggttcccccttcttctctcttctatgtgttgtcaacaatggtagtagtggtgtc |
31205345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 107 - 189
Target Start/End: Complemental strand, 32399810 - 32399727
Alignment:
| Q |
107 |
aaaataatagactcatgaattttccaacttagaaaccgtacccttattttcta-aaaactcaacgattgttacatgccatgtat |
189 |
Q |
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| T |
32399810 |
aaaataacaaactcaagaattttccaactaaaaaaccgtacccttattttctaaaaaacccaacaattgttacatgccatgtat |
32399727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 70
Target Start/End: Original strand, 31205032 - 31205062
Alignment:
| Q |
40 |
aaggacaacctatgtataattttatttgaaa |
70 |
Q |
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| T |
31205032 |
aaggacaacctatgtataattttatttgaaa |
31205062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 137; Significance: 2e-71; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 105 - 314
Target Start/End: Complemental strand, 43415746 - 43415531
Alignment:
| Q |
105 |
acaaaataatagactcatgaattttccaacttagaaaccgtacccttattttctaaaaactcaacgattgttacatgccatgtatgtattatctagcaat |
204 |
Q |
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| T |
43415746 |
acaaaataataggttcatgaattttccaactcataaaccgtacccttattttctaaaaacccaacgattgttacatgccatgtatgtattctctagcaat |
43415647 |
T |
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| Q |
205 |
ttgaaggtgcttcttgaattgatactgatttcacttgtg------ggtttcttctccaattcaatgtttgtgggttccccgtcttctctcttctatgtgt |
298 |
Q |
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| T |
43415646 |
ttgaaggtgcttcttgaattgatattgatttcacttttgaatcgttgtttcttctccaattcaatgtttgtgggttccccgtcttctctcttcccagttt |
43415547 |
T |
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| Q |
299 |
tgtcaacaatggtagt |
314 |
Q |
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|||| ||||||||||| |
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| T |
43415546 |
tgtcgacaatggtagt |
43415531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 118; Significance: 4e-60; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 115 - 292
Target Start/End: Original strand, 8358949 - 8359133
Alignment:
| Q |
115 |
agactcatgaattttccaacttagaaaccgtacccttattttctaaaaactcaacgattgttacatgccatgtatgtattatctagcaatttgaaggtgc |
214 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| || | |||||||||||| | |
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| T |
8358949 |
agactcatgaattttccaacttagaaatcgtacccttattttctaaaaatccaacgattgttacatgccatgtatgtattctccaacaatttgaaggtac |
8359048 |
T |
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| Q |
215 |
ttcttgaattgatactgatttcacttgtg------ggtttcttctccaattcaatgtttgtgggtt-ccccgtcttctctcttct |
292 |
Q |
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| T |
8359049 |
ttcttgaattgatattgatttcacttgtgaatcattgtttcttctccaattcaatgtttgtgggttcccccgtcttctctcttct |
8359133 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 105 - 311
Target Start/End: Complemental strand, 43704212 - 43704000
Alignment:
| Q |
105 |
acaaaataatagactcatgaattttccaacttagaaaccgtacccttattttctaaaaactcaacgattgttacatgccatgtatgtattatctagcaat |
204 |
Q |
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|||||||||||| ||||||||||||||||| | |||||||||||||||||| ||||||| ||| ||| |||||||||||| ||||||| |||||||| |
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| T |
43704212 |
acaaaataataggttcatgaattttccaactcataaaccgtacccttattttttaaaaaccgaacaattcttacatgccatgcatgtattcgctagcaat |
43704113 |
T |
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| Q |
205 |
ttgaaggtgcttcttgaattgatactgatttcacttgtg------ggtttcttctccaattcaatgtttgtgggttccccgtcttctctcttctatgtgt |
298 |
Q |
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|||||||||||||||||||||||| ||||||||||| || |||||||||||||||||||||||| |||||||| ||||||||||||| ||||| |
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| T |
43704112 |
ttgaaggtgcttcttgaattgatattgatttcacttttgaatcgttgtttcttctccaattcaatgtttgcgggttccctgtcttctctcttccctgtgt |
43704013 |
T |
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| Q |
299 |
tgtcaacaatggt |
311 |
Q |
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|||| |||||||| |
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| T |
43704012 |
tgtcgacaatggt |
43704000 |
T |
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