View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19192_low_58 (Length: 330)
Name: NF19192_low_58
Description: NF19192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19192_low_58 |
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Alignment Details
Target: chr1 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 15 - 308
Target Start/End: Original strand, 9797987 - 9798280
Alignment:
| Q |
15 |
gagatgaaccaatatggtcacttgcaccagaatccacaatccatgatccaatatttgagtgattcaaggaataagagaactttgttatacctgatgtaac |
114 |
Q |
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| T |
9797987 |
gagatgaaccaatatggtcacttgcaccagaatccacaatccatgatccaatatttgagtgattcaaggaataagagaactttgttatacctgatgtaac |
9798086 |
T |
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| Q |
115 |
atgtgaaactagattaaccttgctagaagatgctgattgattagctgcagatcatgaacactgaagcagattcaccaactactcatattgatctttggtg |
214 |
Q |
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| T |
9798087 |
atgtgaaactagattaaccttgctagaagatgctgattgattagctgcagatcatgaacactgaagcagattcaccaactactcatattgatctttggtg |
9798186 |
T |
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| Q |
215 |
aaaccataagattcagttccttttacactccttgaatcatcaatgtcctccctgtcttcattcgtctcaagggaagagtgactttccatagcag |
308 |
Q |
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| T |
9798187 |
aaaccataagattcagttccttttacactccttgaatcatcaatgtcctccctgtcttcattcgtctcaagggaagagtgacttgccatagcag |
9798280 |
T |
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Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 197 - 276
Target Start/End: Original strand, 1615903 - 1615982
Alignment:
| Q |
197 |
tcatattgatctttggtgaaaccataagattcagttccttttacactccttgaatcatcaatgtcctccctgtcttcatt |
276 |
Q |
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| T |
1615903 |
tcatgttgttctttggtgaaaccatatgaatcattgcctttgtaaatctttgaatcatcaatgtcctccctttcttcatt |
1615982 |
T |
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