View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19192_low_59 (Length: 328)
Name: NF19192_low_59
Description: NF19192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19192_low_59 |
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Alignment Details
Target: chr8 (Bit Score: 147; Significance: 2e-77; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 154 - 311
Target Start/End: Original strand, 35899096 - 35899251
Alignment:
| Q |
154 |
agagaaatcctgacacaataaatttgaagggtcctcctgctttgaatgtcttggcagcacagtgacaagagcaggtgcatggatgtttttcttcactctt |
253 |
Q |
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| T |
35899096 |
agagaaatcctgacacaataaatttgaagggtcctcctgctttgaatgtcttggcagcacagtgacaagagcaggtgcatggatgtttttcttcactctt |
35899195 |
T |
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| Q |
254 |
aggttccttcttctgaatctgagccatcatatatattcaaaaggaaaactgcaagctg |
311 |
Q |
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| T |
35899196 |
aggttccttcttctgaatctgagccatc--atatattcaaaaggaaaactgcaagctg |
35899251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 10 - 59
Target Start/End: Original strand, 35898955 - 35899004
Alignment:
| Q |
10 |
acatcatcaacaattacaattcttcgatttcagaaggtggttgaacatcc |
59 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
35898955 |
acatcatcaacaattacaattcatcgatttcagaaggtggttgaacatcc |
35899004 |
T |
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