View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19192_low_6 (Length: 707)
Name: NF19192_low_6
Description: NF19192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19192_low_6 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 507; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 507; E-Value: 0
Query Start/End: Original strand, 13 - 660
Target Start/End: Complemental strand, 18512401 - 18511753
Alignment:
| Q |
13 |
agcataggcgtataggttttcaatgtttgaggccacagtagcaaacgaaagcacatgtaatgaactgtttaaccatgtcatattatgtataataactgct |
112 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
18512401 |
agcagaggcgtataggttttcaatgtttgaggccacagtagcaaacgaaagcacatgtaatgaactgtttaaccatgtcatattatgtataataactact |
18512302 |
T |
|
| Q |
113 |
taaaaattgtacaggtaatgaacatgtttgaattgcgaaatcacttttaaataaggtattaggtagttttgattagagttttgatcaaggtttcaacaat |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18512301 |
taaaaattgtacaggtaatgaacatgtttgaattgcaaaatcacttttaaataaggtattaggtagttttgattagagttttgatcaaggtttcaacaat |
18512202 |
T |
|
| Q |
213 |
tatataagttatattatatggattttttagccttttaattaactttgttactttggtnnnnnnnntaaattaactttgttactttggaccaagcagggat |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| |
|
|
| T |
18512201 |
tatataagttatattatatggattttttagtcttttaattaactttgttactttggtaaaaaaaataaattaactttgttactttggaccaagca-ggat |
18512103 |
T |
|
| Q |
313 |
cacgataagctaaagcaactgcgtatttcatctgattctcccagtaagcaagacactgatcatgctcatacaaagaggtcctcgtgaattgttaatgcta |
412 |
Q |
| |
|
||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18512102 |
cacgataagcttaagcaactgcatatttcatctgattctcccagtaagcaagacactgatcatgctcatacaaagaggtcctcgtgaattgttaatgcta |
18512003 |
T |
|
| Q |
413 |
gcttgtgttgatctagcactgaagcaagctgtgccctgctgtttgtcctgta-ttattgnnnnnnnnnnnnnnnnngattgcatggataatatatcatat |
511 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |
|
|
| T |
18512002 |
gcttgtgttgatctagcactgaagcaaactgtgccctgctgtttgtcctgtagatattgtttttattttttattttgattgcatggataatatatcatat |
18511903 |
T |
|
| Q |
512 |
ggtgttgaagacataattacatttcacttgtttcttggtacatccgtaggttgtttccttgtttcctcatccgtaggttaattttgaatctgcaaaatgt |
611 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
18511902 |
ggtgttgaagacataattacatttcacttgtttcttggtacatccgtaggttgtttccttgtttcctcatccgtaggttacttttgaatctgcaaaatgt |
18511803 |
T |
|
| Q |
612 |
tctgttgtgaacaatgttt-tcagatggtaagtatcttagtacatgatga |
660 |
Q |
| |
|
||||||||||||||||||| |||||| |||||||||||||||||||||| |
|
|
| T |
18511802 |
tctgttgtgaacaatgtttagcagatgataagtatcttagtacatgatga |
18511753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 118
Target Start/End: Complemental strand, 1984818 - 1984785
Alignment:
| Q |
85 |
ccatgtcatattatgtataataactgcttaaaaa |
118 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| |
|
|
| T |
1984818 |
ccatgtcatattatgtgtaataactgcttaaaaa |
1984785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 145; Significance: 6e-76; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 145; E-Value: 6e-76
Query Start/End: Original strand, 13 - 268
Target Start/End: Original strand, 14517095 - 14517348
Alignment:
| Q |
13 |
agcataggcgtataggttttcaatgtttgaggccacagtagcaaacgaaagcacatgtaatgaactgtttaaccatgtcatattatgtataataactgct |
112 |
Q |
| |
|
|||| ||| ||||||||| |||||||||||| ||||| ||||||| ||||||||| |||| || || ||||||||||||||||||| | |||||||| | |
|
|
| T |
14517095 |
agcaaaggtgtataggttctcaatgtttgagcccacaatagcaaaagaaagcacaggtaacgatctttttaaccatgtcatattatatgtaataactatt |
14517194 |
T |
|
| Q |
113 |
taaaaattgtacaggtaatgaacatgtttgaattgcgaaatcacttttaaataaggtattaggtagttttgattagagttttgatcaaggtttcaacaat |
212 |
Q |
| |
|
||||||| ||| |||| ||||||||||||||||| | |||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| || |
|
|
| T |
14517195 |
taaaaatagtagaggtgatgaacatgtttgaattccaaaatcacttttaaataaggtattaggtagttttgtttagagttttgatcaagttttcaactat |
14517294 |
T |
|
| Q |
213 |
tatataagttatattatatggattttttagccttttaattaactttgttactttgg |
268 |
Q |
| |
|
| ||| |||||||||||||| |||||| ||||||||||||||||||||||||||| |
|
|
| T |
14517295 |
tgtat--gttatattatatgggttttttggccttttaattaactttgttactttgg |
14517348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 280 - 461
Target Start/End: Original strand, 14517329 - 14517509
Alignment:
| Q |
280 |
aattaactttgttactttggaccaagcagggatcacgataagctaaagcaactgcgtatttcatctgattctcccagtaagcaagacactgatcatgctc |
379 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| ||||||| |||||||| |||| ||||||||||||||| || ||||||| |||||||||||||| |
|
|
| T |
14517329 |
aattaactttgttactttggaccaagcagg-atcaccataagctgaagcaactacgtacttcatctgattctcctagcaagcaaggcactgatcatgctc |
14517427 |
T |
|
| Q |
380 |
atacaaagaggtcctcgtgaattgttaatgctagcttgtgttgatctagcactgaagcaagctgtgccctgctgtttgtcct |
461 |
Q |
| |
|
||||| |||||||||||||||||||||||| |||||||| ||||||||||||||||||| |||| ||||||| ||| |||| |
|
|
| T |
14517428 |
atacatagaggtcctcgtgaattgttaatggtagcttgttttgatctagcactgaagcagactgttccctgctatttatcct |
14517509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 13 - 110
Target Start/End: Original strand, 14522081 - 14522179
Alignment:
| Q |
13 |
agcataggcgtataggttttc-aatgtttgaggccacagtagcaaacgaaagcacatgtaatgaactgtttaaccatgtcatattatgtataataactg |
110 |
Q |
| |
|
|||| ||| |||||||||||| |||||||||| ||||| ||||||| ||||||| |||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
14522081 |
agcagaggtgtataggttttccaatgtttgagcccacaatagcaaaagaaagcaaatgtaatgaactgtttaaccatgtcatattatgtgtaataactg |
14522179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 488 - 563
Target Start/End: Original strand, 14517536 - 14517611
Alignment:
| Q |
488 |
gattgcatggataatatatcatatggtgttgaagacataattacatttcacttgtttcttggtacatccgtaggtt |
563 |
Q |
| |
|
||||||||| |||||||||||| || |||||||| | || ||||||||||| | |||| |||||||| |||||||| |
|
|
| T |
14517536 |
gattgcatgaataatatatcatgtgatgttgaaggcgtatttacatttcacatctttcatggtacattcgtaggtt |
14517611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.000000000001; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 369 - 443
Target Start/End: Complemental strand, 6953466 - 6953392
Alignment:
| Q |
369 |
tgatcatgctcatacaaagaggtcctcgtgaattgttaatgctagcttgtgttgatctagcactgaagcaagctg |
443 |
Q |
| |
|
|||||| |||||||||||||||||||| | |||||||||||||| ||||| | |||| |||| ||||||| |||| |
|
|
| T |
6953466 |
tgatcaagctcatacaaagaggtcctcatcaattgttaatgctaccttgtttagatcaagcaatgaagcaggctg |
6953392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 284 - 418
Target Start/End: Complemental strand, 6920380 - 6920247
Alignment:
| Q |
284 |
aactttgttacttt-ggaccaagcagggatcacgataagctaaagcaactgcgtatttcatctgattctcccagtaagcaa-gacactgatcatgctcat |
381 |
Q |
| |
|
|||||||||||||| |||||| ||||| ||||| ||||||||||| || || || || ||||| | |||||| ||||||| | ||||||||||||||| |
|
|
| T |
6920380 |
aactttgttacttttggaccatgcagg-atcaccataagctaaagaaattgtgtttt--atctgctcctcccaataagcaaaggaactgatcatgctcat |
6920284 |
T |
|
| Q |
382 |
acaaagaggtcctcgtgaattgttaatgctagcttgt |
418 |
Q |
| |
|
|||||||||| ||| | || ||||||||||| ||||| |
|
|
| T |
6920283 |
acaaagaggttctcatcaactgttaatgctaccttgt |
6920247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 368 - 438
Target Start/End: Complemental strand, 6944500 - 6944430
Alignment:
| Q |
368 |
ctgatcatgctcatacaaagaggtcctcgtgaattgttaatgctagcttgtgttgatctagcactgaagca |
438 |
Q |
| |
|
||||||||||||||| |||||||||||| | || ||||||| ||| ||||| ||||| |||| ||||||| |
|
|
| T |
6944500 |
ctgatcatgctcatataaagaggtcctcatcaactgttaattctaccttgttttgatgaagcaatgaagca |
6944430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 230 - 266
Target Start/End: Complemental strand, 6944608 - 6944572
Alignment:
| Q |
230 |
atggattttttagccttttaattaactttgttacttt |
266 |
Q |
| |
|
|||| ||||||||||||||||| |||||||||||||| |
|
|
| T |
6944608 |
atggtttttttagccttttaatcaactttgttacttt |
6944572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 494 - 567
Target Start/End: Original strand, 13112662 - 13112735
Alignment:
| Q |
494 |
atggataatatatcatatggtgttgaagacataattacatttcacttgtttcttggtacatccgtaggttgttt |
567 |
Q |
| |
|
||||||||| ||| |||| |||||||| |||| ||||||| ||| ||||||||||||||| | ||||||||| |
|
|
| T |
13112662 |
atggataatttattctatgatgttgaaggcatatttacattacacatgtttcttggtacatttgaaggttgttt |
13112735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University