View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19192_low_61 (Length: 322)
Name: NF19192_low_61
Description: NF19192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19192_low_61 |
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Alignment Details
Target: chr1 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 287
Target Start/End: Original strand, 2111072 - 2111342
Alignment:
| Q |
1 |
atgtttcttgtgacgtacgataatgtttaaaagttgtttaaattttgacgacggactatgatttcttatttgagtagaagttcacgattatcattatttt |
100 |
Q |
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| T |
2111072 |
atgtttcttgtgacgtacgataatgtttaaaagttgtttaaattttgacgacggactatg--------------tagaagttcacggttatcattatttt |
2111157 |
T |
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| Q |
101 |
caaagttgagaaaataatttgattaatcaagttttatttaaaaatgtannnnnnngggtttttaattggacaatatcaatcaatatgttactaaaaattg |
200 |
Q |
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| T |
2111158 |
taaagttgagaaaataatttgattaatcaaattttatttaaaaatgtacttttt-gggtttttaattggaaaatatcaatcaatatgttactaaaaattg |
2111256 |
T |
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| Q |
201 |
tttaaaattaaatgaagaaaagtttaggattccaaattaattgttaatatttccttaactttctcatatccctgcaaatcattgtac |
287 |
Q |
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| T |
2111257 |
tttaaaattaattgaagaaaagtttaggattccaaattaatt-ttaatatttccttaactttctcatatccctgcaaatcattgtac |
2111342 |
T |
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Target: chr7 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 16 - 207
Target Start/End: Original strand, 24921315 - 24921507
Alignment:
| Q |
16 |
tacgataatgtttaaaagttgtttaaattttgacgacggactatgatttcttatttgagtagaagttcacgattatcattattttcaaagttgagaaaat |
115 |
Q |
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| T |
24921315 |
tacgataatgtttaaaagttgttcaaattttgacgacagtcaacgatttcttactttagtagaagttcacggttgtcattatctttaaggttgggaaaat |
24921414 |
T |
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| Q |
116 |
aatttgattaatc-aagttttatttaaaaatgtannnnnnngggtttttaattggacaatatcaatcaatatgtta-ctaaaaattgtttaaaa |
207 |
Q |
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| T |
24921415 |
aatttgattaatcaaatttttaattaaaaatata-ctatttgggtttttaattgaaaactatcgatcaataagttacctaaaaattgtttaaaa |
24921507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 213 - 303
Target Start/End: Original strand, 24921537 - 24921627
Alignment:
| Q |
213 |
tgaagaaaagtttaggattccaaattaattgttaatatttccttaactttctcatatccctgcaaatcattgtacgagatctttgctaata |
303 |
Q |
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| T |
24921537 |
tgaagagaagttcagaatcccaaattaattgttaatatttccttaattttcttttgtctctgtaaatcattgtacaagatctttgctaata |
24921627 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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