View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19192_low_63 (Length: 319)
Name: NF19192_low_63
Description: NF19192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19192_low_63 |
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| [»] scaffold0005 (1 HSPs) |
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Alignment Details
Target: scaffold0005 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 303
Target Start/End: Original strand, 208028 - 208334
Alignment:
| Q |
1 |
agagagagacataataatatgatggtggttgaatttcactataaaaagaagcaatgagtacaatagcttgtacaaaccaaaaccaaaaccnnnnnnnnnn |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
208028 |
agagagagacataataatatgatggtggttgaatttcactataaaaagaagcaatgagtacaatagcttgtacaaaccaaaaccaaaaacaaaaaaaaca |
208127 |
T |
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| Q |
101 |
nnnnnnn----tatttctctttaccatatttcttaatccaatatactataacacatgaaatgaaaggataaactctctttctttgttgctatatttgaag |
196 |
Q |
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| T |
208128 |
aaaataaaaaatatttctctttaccatatttcttaatccaatatactataacacatgaaatgaaaggataaactctctttctttgttgctatatttgaag |
208227 |
T |
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| Q |
197 |
acagtttccactaaaacaaacaaacacaatggcttatttggtgtatttattactacaaaagccaaaccaccgccttgttttgcagaaggagcagtagaag |
296 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
208228 |
acagtttccactaaaacaaacaaacacaatggcttatttggtgtatttattactacaaaagccaaaccaccgccttgttttgcagaaggagcagtagaag |
208327 |
T |
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| Q |
297 |
aaccatt |
303 |
Q |
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| T |
208328 |
aaccatt |
208334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 303
Target Start/End: Complemental strand, 14609349 - 14609043
Alignment:
| Q |
1 |
agagagagacataataatatgatggtggttgaatttcactataaaaagaagcaatgagtacaatagcttgtacaaaccaaaaccaaaaccnnnnnnnnnn |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
14609349 |
agagagagacataataatatgatggtggttgaatttcactataaaaagaagcaatgagtacaatagcttgtacaaaccaaaaccaaaaacaaaaaaaaca |
14609250 |
T |
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| Q |
101 |
nnnnnnn----tatttctctttaccatatttcttaatccaatatactataacacatgaaatgaaaggataaactctctttctttgttgctatatttgaag |
196 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14609249 |
aaaataaaaaatatttctctttaccatatttcttaatccaatatactataacacatgaaatgaaaggataaactctctttctttgttgctatatttgaag |
14609150 |
T |
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| Q |
197 |
acagtttccactaaaacaaacaaacacaatggcttatttggtgtatttattactacaaaagccaaaccaccgccttgttttgcagaaggagcagtagaag |
296 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14609149 |
acagtttccactaaaacaaacaaacacaatggcttatttggtgtatttattactacaaaagccaaaccaccgccttgttttgcagaaggagcagtagaag |
14609050 |
T |
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| Q |
297 |
aaccatt |
303 |
Q |
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||||||| |
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| T |
14609049 |
aaccatt |
14609043 |
T |
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