View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19192_low_67 (Length: 306)
Name: NF19192_low_67
Description: NF19192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19192_low_67 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 159; Significance: 1e-84; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 82 - 298
Target Start/End: Complemental strand, 2110748 - 2110531
Alignment:
| Q |
82 |
atttactactacaaaaatctaggacaaacaatt---tgaagtgttgtgaacaaaatatcagtctcacgtgtcatgattgaccatataaaaaccacatttg |
178 |
Q |
| |
|
||||||||||||||||||||||||||||||| | ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2110748 |
atttactactacaaaaatctaggacaaacaactaattgaagtgttgtaaacaaaatatcagtctcacgtgtcatgattgaccatataaaaaccacatttg |
2110649 |
T |
|
| Q |
179 |
ccaatgtttttcttaccgtgtcttaagtcttataacaatcgtttctgtttcattccctttcgannnnnnnncttcctcaaattcctctgtctcctccctt |
278 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| |||||| |
|
|
| T |
2110648 |
ccaatgtttttcttaccgtgtcttaagtcttataacaatcgtttctgtttcattccctttcgattttttttcttcctcaaattc--ctgtctcttccctt |
2110551 |
T |
|
| Q |
279 |
tgtgttcatgtttctgtgct |
298 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
2110550 |
tgtgttcatgtttctgtgct |
2110531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University