View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19192_low_68 (Length: 302)

Name: NF19192_low_68
Description: NF19192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19192_low_68
NF19192_low_68
[»] chr8 (1 HSPs)
chr8 (16-224)||(5662761-5662970)
[»] chr7 (2 HSPs)
chr7 (16-183)||(11649352-11649515)
chr7 (16-50)||(22007561-22007595)
[»] chr3 (5 HSPs)
chr3 (16-161)||(52131068-52131212)
chr3 (139-224)||(31688059-31688144)
chr3 (139-224)||(31896723-31896808)
chr3 (139-224)||(31912432-31912517)
chr3 (139-183)||(31946080-31946124)
[»] scaffold0003 (2 HSPs)
scaffold0003 (106-224)||(36755-36873)
scaffold0003 (112-192)||(42943-43024)
[»] chr6 (2 HSPs)
chr6 (112-192)||(27444337-27444418)
chr6 (124-170)||(4660112-4660158)
[»] scaffold0475 (1 HSPs)
scaffold0475 (124-170)||(7410-7456)
[»] chr4 (1 HSPs)
chr4 (229-278)||(38467450-38467499)


Alignment Details
Target: chr8 (Bit Score: 158; Significance: 4e-84; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 16 - 224
Target Start/End: Complemental strand, 5662970 - 5662761
Alignment:
Q  16 gagaggaagaagtggaagaatcacgatttacagagaaagggggagtggacggtg-gcgatggagagaatgggtgcgagagaaagggggtggagatgcgga 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| |||    
T  5662970 gagaggaagaagtggaagaatcacgatttacagagaaagggggagtggacggtgtgcgatggggagaatgggtgcgagagaaagggggtggagatgggga 5662871  T
Q  115 atcgcagagagatggaaagagaggagggttaggtcagagccatggttcccaatgagatggatatgcaacgctgtattcgaagcggttagcattaattgtt 214  Q
    ||| |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| ||| | |||| |||||||||||    
T  5662870 atcacagagagatggagagagaggagggttaggtcagagccatggttcgcaatgagatggatatgcaacactgtattggaaacagttaacattaattgtt 5662771  T
Q  215 tatcatttac 224  Q
    | ||||||||    
T  5662770 tgtcatttac 5662761  T

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Target: chr7 (Bit Score: 119; Significance: 8e-61; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 16 - 183
Target Start/End: Original strand, 11649352 - 11649515
Alignment:
Q  16 gagaggaagaagtggaagaatcacgatttacagagaaagggggagtggacggtggcgatggagagaatgggtgcgagagaaagggggtggagatgcggaa 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| ||||    
T  11649352 gagaggaagaagtggaagaatcacgatttacagagaaagggggagtggacggtggcgatggggagaatgggtgcgagagaaaggcggtggagatggggaa 11649451  T
Q  116 tcgcagagagatggaaagagaggagggttaggtcagagccatggttcccaatgagatggatatgcaac 183  Q
    ||    | ||||||| ||| ||||||||||||||| |||||||||| |||||||||||||||||||||    
T  11649452 tc----atagatggagagaaaggagggttaggtcaaagccatggtttccaatgagatggatatgcaac 11649515  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 50
Target Start/End: Complemental strand, 22007595 - 22007561
Alignment:
Q  16 gagaggaagaagtggaagaatcacgatttacagag 50  Q
    |||||||||||||||||||||| ||||||||||||    
T  22007595 gagaggaagaagtggaagaatcgcgatttacagag 22007561  T

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Target: chr3 (Bit Score: 98; Significance: 3e-48; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 16 - 161
Target Start/End: Complemental strand, 52131212 - 52131068
Alignment:
Q  16 gagaggaagaagtggaagaatcacgatttacagagaaagggggagtggacggtggcgatggagagaatgggtgcgagagaaagggggtggagatgcggaa 115  Q
    ||||||||||||||||||||||||||||||||| |   | |||| |||||||||||||||| |||||||||||| |||||||||||||||||||| ||||    
T  52131212 gagaggaagaagtggaagaatcacgatttacagggtg-gcgggactggacggtggcgatggggagaatgggtgcaagagaaagggggtggagatggggaa 52131114  T
Q  116 tcgcagagagatggaaagagaggagggttaggtcagagccatggtt 161  Q
    ||| ||||||||||| ||||||||||||||||||||||||||||||    
T  52131113 tcgtagagagatggagagagaggagggttaggtcagagccatggtt 52131068  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 139 - 224
Target Start/End: Complemental strand, 31688144 - 31688059
Alignment:
Q  139 agggttaggtcagagccatggttcccaatgagatggatatgcaacgctgtattcgaagcggttagcattaattgtttatcatttac 224  Q
    ||||||||||||||||||| ||| ||||| ||||||||||||||| || |||| ||| | | || |||||||| ||| ||||||||    
T  31688144 agggttaggtcagagccattgtttccaataagatggatatgcaacactttattggaaaccgataacattaattatttgtcatttac 31688059  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 139 - 224
Target Start/End: Original strand, 31896723 - 31896808
Alignment:
Q  139 agggttaggtcagagccatggttcccaatgagatggatatgcaacgctgtattcgaagcggttagcattaattgtttatcatttac 224  Q
    ||||||||||||||||||| ||| ||||| ||||||||||||||| || |||| |||   | || |||||||| ||| ||||||||    
T  31896723 agggttaggtcagagccattgtttccaataagatggatatgcaacactttattggaaatcgataacattaattatttgtcatttac 31896808  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 139 - 224
Target Start/End: Original strand, 31912432 - 31912517
Alignment:
Q  139 agggttaggtcagagccatggttcccaatgagatggatatgcaacgctgtattcgaagcggttagcattaattgtttatcatttac 224  Q
    ||||||||||||||||||| ||| ||||| ||||||||||||||| || |||| |||   | || |||||||| ||| ||||||||    
T  31912432 agggttaggtcagagccattgtttccaataagatggatatgcaacactttattggaaatcgataacattaattatttgtcatttac 31912517  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 139 - 183
Target Start/End: Original strand, 31946080 - 31946124
Alignment:
Q  139 agggttaggtcagagccatggttcccaatgagatggatatgcaac 183  Q
    ||||||||||||||||||| ||| ||||| |||||||||||||||    
T  31946080 agggttaggtcagagccattgtttccaataagatggatatgcaac 31946124  T

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Target: scaffold0003 (Bit Score: 59; Significance: 5e-25; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 106 - 224
Target Start/End: Original strand, 36755 - 36873
Alignment:
Q  106 agatgcggaatcgcagagagatggaaagagaggagggttaggtcagagccatggttcccaatgagatggatatgcaacgctgtattcgaagcggttagca 205  Q
    ||||| ||||||| ||||||||||| ||| |||||||||| ||||||||||| ||| ||||||||||||||||||||| ||||||| ||| | | || ||    
T  36755 agatgaggaatcgtagagagatggagagaaaggagggttaagtcagagccattgtttccaatgagatggatatgcaacactgtattggaaaccgataaca 36854  T
Q  206 ttaattgtttatcatttac 224  Q
    |||||| ||| ||||||||    
T  36855 ttaattatttgtcatttac 36873  T

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Target: scaffold0003; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 112 - 192
Target Start/End: Original strand, 42943 - 43024
Alignment:
Q  112 ggaatcgcagagagatggaaagagaggagggttaggtcagagcca-tggttcccaatgagatggatatgcaacgctgtattc 192  Q
    ||||||| ||||||||||| ||| ||||||||||||||||||||| || |||||||||| ||||||||||||| ||||||||    
T  42943 ggaatcgtagagagatggagagaaaggagggttaggtcagagccattgtttcccaatgaaatggatatgcaacactgtattc 43024  T

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Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 112 - 192
Target Start/End: Complemental strand, 27444418 - 27444337
Alignment:
Q  112 ggaatcgcagagagatggaaagagaggagggttaggtcagagcca-tggttcccaatgagatggatatgcaacgctgtattc 192  Q
    ||||||| ||||||||||| ||| ||||||||||||||||||||| || |||||||||| ||||||||||||| ||||||||    
T  27444418 ggaatcgtagagagatggagagaaaggagggttaggtcagagccattgtttcccaatgaaatggatatgcaacactgtattc 27444337  T

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Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 124 - 170
Target Start/End: Original strand, 4660112 - 4660158
Alignment:
Q  124 agatggaaagagaggagggttaggtcagagccatggttcccaatgag 170  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||    
T  4660112 agatggagagagaggagggttaggtcagagccatggttcccaatgag 4660158  T

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Target: scaffold0475 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0475
Description:

Target: scaffold0475; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 124 - 170
Target Start/End: Original strand, 7410 - 7456
Alignment:
Q  124 agatggaaagagaggagggttaggtcagagccatggttcccaatgag 170  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||    
T  7410 agatggagagagaggagggttaggtcagagccatggttcccaatgag 7456  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 278
Target Start/End: Original strand, 38467450 - 38467499
Alignment:
Q  229 aaatcatatgccataaaagctcatagccttggtacaccacttttgcatgg 278  Q
    |||||||||| ||||||||| | ||||||||||||| ||| |||||||||    
T  38467450 aaatcatatgtcataaaagcacctagccttggtacaacacatttgcatgg 38467499  T

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