View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19192_low_69 (Length: 301)
Name: NF19192_low_69
Description: NF19192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19192_low_69 |
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Alignment Details
Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 13 - 283
Target Start/End: Original strand, 31125337 - 31125607
Alignment:
| Q |
13 |
gagaggaagttcttgaaagacgaatggtttgtttgagagcaagagcgatgagactagagaagaggaatgagctgaatgagtagacatgaaatgcgacgag |
112 |
Q |
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| T |
31125337 |
gagaggaagttctcgaaagacgaatagtttgtttcagtgcaagagcgatgagactagagaagagaaatgagctgaatgagtagacatgaaatgcgacgag |
31125436 |
T |
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| Q |
113 |
gttttcggcgatggcggtggtggggacacaggaggggtctgtgttgagagtgttggaagggtcgtttgggttgaaggagaggccgatgaatacgccgagg |
212 |
Q |
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| T |
31125437 |
attttcggcgatggcggtggtggggatgcaggaggggttggtgttgagagtgttggaggggtcgtttgggttgaaggagaggccgatgaatacgccgagg |
31125536 |
T |
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| Q |
213 |
gtgaagagggagtttacgtttgtgattgcgtcgagggctgttatgtggacgctggtgattgatgatgagag |
283 |
Q |
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| T |
31125537 |
gtgaagagggagtttacgtttgtgattgcgtcgagggctgttatgtggacgctggtgattgatgatgagag |
31125607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 95; Significance: 2e-46; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 106 - 240
Target Start/End: Original strand, 2420276 - 2420410
Alignment:
| Q |
106 |
cgacgaggttttcggcgatggcggtggtggggacacaggaggggtctgtgttgagagtgttggaagggtcgtttgggttgaaggagaggccgatgaatac |
205 |
Q |
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| T |
2420276 |
cgacgaggttttcgacgatgtcggtggtggggacgcaggacgggtttgtgttgagagtgttgaaggggtcatttgggttgaaggagaggccgatgaatat |
2420375 |
T |
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| Q |
206 |
gccgagggtgaagagggagtttacgtttgtgattg |
240 |
Q |
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| T |
2420376 |
gccgagagtgaagagggagtttacgtttgtgattg |
2420410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 106 - 239
Target Start/End: Original strand, 10615433 - 10615566
Alignment:
| Q |
106 |
cgacgaggttttcggcgatggcggtggtggggacacaggaggggtctgtgttgagagtgttggaagggtcgtttgggttgaaggagaggccgatgaatac |
205 |
Q |
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| T |
10615433 |
cgacgaggttttcgacgatgtcggtggtggggatgcaagacgggtttgtgttgagagtgttgaaggggtcgtttgggttgaaggaaaggtcgatgaatat |
10615532 |
T |
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| Q |
206 |
gccgagggtgaagagggagtttacgtttgtgatt |
239 |
Q |
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| T |
10615533 |
gctgagagtgaagagggagtttacgtttgtgatt |
10615566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 79; Significance: 6e-37; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 106 - 232
Target Start/End: Complemental strand, 46469889 - 46469763
Alignment:
| Q |
106 |
cgacgaggttttcggcgatggcggtggtggggacacaggaggggtctgtgttgagagtgttggaagggtcgtttgggttgaaggagaggccgatgaatac |
205 |
Q |
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|||||||||||||||||||| |||||||||||| ||||| |||| | |||||||||||||| | ||||||||| |||||||||||||| ||||||||| |
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| T |
46469889 |
cgacgaggttttcggcgatgtcggtggtggggatgcaggacgggtttatgttgagagtgttgaaggggtcgtttaggttgaaggagaggtcgatgaatat |
46469790 |
T |
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| Q |
206 |
gccgagggtgaagagggagtttacgtt |
232 |
Q |
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| T |
46469789 |
gccgagagtgaagagggagtttacgtt |
46469763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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