View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19192_low_7 (Length: 701)
Name: NF19192_low_7
Description: NF19192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19192_low_7 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 499; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 499; E-Value: 0
Query Start/End: Original strand, 21 - 701
Target Start/End: Original strand, 6614754 - 6615416
Alignment:
| Q |
21 |
gcatcttccctaataagcggtaacatctcttctagtgcagaaacatgaaaagtcaaaacaacatccgtagccgctcccattttagctagaaaattggcgc |
120 |
Q |
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| T |
6614754 |
gcatcttccctaataagcggtaacatctcttctggtgcagaagcatgaaaagtcaaaacaacatccgtagccgctcccattttagctagaaaatcggcgc |
6614853 |
T |
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| Q |
121 |
aatgattccccttccgaagagtatgaaaaatagaagaactgatgagaatgatcaagtccttaatatcatgaataagagtggcgtagccgcgtaggtatga |
220 |
Q |
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| T |
6614854 |
aatgattctcctcccgaagagtatgaaaaatagaagaaccgatgagaatgatcaagtccttaatatcatgaataagagtggcgt--------aggtatga |
6614945 |
T |
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| Q |
221 |
aaattcaaaggaggaccgttgatgaggctgaccgaatggagcgaatcggagtagcacacaaaatcagatattcctagagctctaaccatgcgcaatcctt |
320 |
Q |
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| T |
6614946 |
aaattcaaaggtggaccgttgatgaggctgaccgaatggagcgaatcggagtagcacacaaaatcagatattcctagagctctaaccatgcgcaatcctt |
6615045 |
T |
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| Q |
321 |
gatagattgcttgcaattcagcaataagaatgtcagaacagtcagcaatgtgtccagagaatcctgaatattgcctcaaataataatgagcnnnnnnnnn |
420 |
Q |
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| T |
6615046 |
gatagattgcttgcaattcagcaataagaatgtcagaacagtcagcaatgtgtccagagaatcctgaatattgcctcaattaataatgagc--ttttttt |
6615143 |
T |
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| Q |
421 |
nnnnnnnnnnaaggaacaattaataataatgagctgactagcccataaagttttgaatttaactcttgttgtgagtgtgagacctcttgaatggacgaca |
520 |
Q |
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| T |
6615144 |
cttcttttttaaggaacaattaataataatgagctgactagcccataaagttttgaatttaactcttgttgtgagtgtgagacctcttgaatggacgaca |
6615243 |
T |
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| Q |
521 |
tgtacatctgtaaatacgtgaaattctcgataaaccccaaatgcctgctcagataaacttttaactccatccatcatacgtgaaattgtgaatcattgat |
620 |
Q |
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| T |
6615244 |
tgtacatctgtaaatacgtgaaagtctcgataaaccccaaatgcctgctcagataaacttttaac----tccatcatacgtgaaattgtgaatcattgat |
6615339 |
T |
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| Q |
621 |
aaaaagcaattaaaaaaacttgnnnnnnnnnnnaccaaaacaacttttaaaataattcctaattaatgagtttagatttac |
701 |
Q |
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| T |
6615340 |
aaaaagcaattaaaaaaacttg----tttttttaccaaaacaacttttaaaataattcctaattaatgagtttagatttac |
6615416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 236 - 294
Target Start/End: Complemental strand, 40924400 - 40924342
Alignment:
| Q |
236 |
ccgttgatgaggctgaccgaatggagcgaatcggagtagcacacaaaatcagatattcc |
294 |
Q |
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| T |
40924400 |
ccgttgatgaggctaacaaagtggagagagtcggagtagcacacaaaatcatatattcc |
40924342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 217 - 287
Target Start/End: Original strand, 2126958 - 2127028
Alignment:
| Q |
217 |
atgaaaattcaaaggaggaccgttgatgaggctgaccgaatggagcgaatcggagtagcacacaaaatcag |
287 |
Q |
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| T |
2126958 |
atgaaacttcatgggaggtccgttgatgaggctaacagaatggaaggagtcggagtagcacacaaaatcag |
2127028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 238 - 294
Target Start/End: Original strand, 31727681 - 31727737
Alignment:
| Q |
238 |
gttgatgaggctgaccgaatggagcgaatcggagtagcacacaaaatcagatattcc |
294 |
Q |
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| T |
31727681 |
gttgatgaggctaacggagtggagagagtcggagtagcacacaaaatcggatattcc |
31727737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 237 - 294
Target Start/End: Original strand, 42923615 - 42923672
Alignment:
| Q |
237 |
cgttgatgaggctgaccgaatggagcgaatcggagtagcacacaaaatcagatattcc |
294 |
Q |
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| T |
42923615 |
cgttgatgaggctaaccgagtggagagagttggagtagcacacgaaatcggatattcc |
42923672 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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