View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19192_low_71 (Length: 297)
Name: NF19192_low_71
Description: NF19192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19192_low_71 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 289; Significance: 1e-162; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 297
Target Start/End: Original strand, 51417698 - 51417994
Alignment:
| Q |
1 |
cagagataacaaagtctccacccctttttggtgtgtgatatcaatttcgatcgaatcattttactaacttttaattgccgataagcttctttataccagt |
100 |
Q |
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| T |
51417698 |
cagagataacaaagtctccacccctttttggtgtgtgatatcaatttcgatcgaatcattttactaacttttaattgccgataagcttctttataccagt |
51417797 |
T |
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| Q |
101 |
ttgaactctttagcaccaagacagaacttgttcaaagacacatttaattaaattgtctcaactaacgaaaattaacaaatttaaagcatgccaaagaaaa |
200 |
Q |
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| T |
51417798 |
ttgaactctttagcaccaagacagaacttgttcaaagacacatttaattaaattgtctcaactaacgaaaattaacaaatttaaagcatgccaaagaaaa |
51417897 |
T |
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| Q |
201 |
attaattaattaaaaggagttccaataacattgaaagaatggaaaaagaaggacgatcacaataaaactgtcatgattatacttcactactatagct |
297 |
Q |
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| T |
51417898 |
attaattaattaaaaggagttccaataacatagaaagaatggaaaaagaaggacgatcacaataaaagtgtcatgattatacttcactactatagct |
51417994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 212 - 290
Target Start/End: Original strand, 51412871 - 51412949
Alignment:
| Q |
212 |
aaaaggagttccaataacattgaaagaatggaaaaagaaggacgatcacaataaaactgtcatgattatacttcactac |
290 |
Q |
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| T |
51412871 |
aaaagaagttccaataacaaggaaagtaaggaaaaagaaagacaagcacaatgaaactgtcatgattatagttcactac |
51412949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 267
Target Start/End: Original strand, 29323357 - 29323615
Alignment:
| Q |
1 |
cagagataacaaagtctccacccctttttggtgtgtgatatcaatttcgatcgaatcattttactaacttttaattgccgataagcttctttataccagt |
100 |
Q |
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| T |
29323357 |
cagagataacaaagtctccacccctttttggtgtgtgaagtcaatttcaatcgaatcattttactaacttttaattgctgataagtttctttataccact |
29323456 |
T |
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| Q |
101 |
ttgaactctttagcaccaagacagaacttgttcaaagacacatttaattaaattgtctcaactaacgaaaattaacaaatttaaagcatgccaaagaaaa |
200 |
Q |
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| T |
29323457 |
ttgaactctttagcaccaagacagaacttgttcaaggacacatttaattaaattg--tcaactaacgaaaattaac------aaagcatgccaaagaaaa |
29323548 |
T |
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| Q |
201 |
attaattaattaaaaggagttccaataacattgaaagaatggaaaaagaaggacgatcacaataaaa |
267 |
Q |
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| T |
29323549 |
ataaattaattaaaaggagttccaataacatagaaagaaaggaaaaagaaggacagtcacaataaaa |
29323615 |
T |
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