View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19192_low_73 (Length: 295)

Name: NF19192_low_73
Description: NF19192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19192_low_73
NF19192_low_73
[»] chr1 (3 HSPs)
chr1 (19-295)||(9798260-9798537)
chr1 (19-83)||(49642439-49642503)
chr1 (197-281)||(6755046-6755130)
[»] scaffold0164 (3 HSPs)
scaffold0164 (19-83)||(18131-18195)
scaffold0164 (19-83)||(28511-28575)
scaffold0164 (193-269)||(17954-18030)
[»] chr8 (2 HSPs)
chr8 (19-83)||(15191779-15191843)
chr8 (193-269)||(15191944-15192020)
[»] chr3 (1 HSPs)
chr3 (19-83)||(53976797-53976861)
[»] chr4 (1 HSPs)
chr4 (19-83)||(18252627-18252691)
[»] chr7 (1 HSPs)
chr7 (19-71)||(16255218-16255270)
[»] chr6 (1 HSPs)
chr6 (19-71)||(26132138-26132190)


Alignment Details
Target: chr1 (Bit Score: 250; Significance: 1e-139; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 19 - 295
Target Start/End: Complemental strand, 9798537 - 9798260
Alignment:
Q  19 cctttacccactctcaacaagatctttt-ccatggttttgcaacatgagagacagttcaagatttctacaccagtttatgagtccgaaattctcataaat 117  Q
    ||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  9798537 cctttacccactctcaacaagatttttttccatggttttgcaacatgagagacagttcaagatttctacaccagtttatgagtccaaaattctcataaat 9798438  T
Q  118 gctgcttcttatgggagatcacaaggtaggggacgtggcaatggtccttcattcccctcaaatcagacgcatacctgttctttatgtggtagaaatgggc 217  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  9798437 gctgcttcttatgggaaatcacaaggtaggggacgtggcaatggtccttcattcccctcaaatcagacgcatacctgttctttttgtggtagaaatgggc 9798338  T
Q  218 ataccattgaaacttgttataggaaacattgttttcatccaaattttggaaagaattctgctatggaaagtcactctt 295  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  9798337 ataccattgaaacttgttataggaaacattgttttcatccaaattttggaaagaattctgctatggcaagtcactctt 9798260  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 19 - 83
Target Start/End: Complemental strand, 49642503 - 49642439
Alignment:
Q  19 cctttacccactctcaacaagatcttttccatggttttgcaacatgagagacagttcaagatttc 83  Q
    |||||||| ||| |||| ||||| ||||| |||||| ||||||||||||||||||||||||||||    
T  49642503 cctttaccaactatcaataagattttttctatggttatgcaacatgagagacagttcaagatttc 49642439  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 197 - 281
Target Start/End: Complemental strand, 6755130 - 6755046
Alignment:
Q  197 ctttatgtggtagaaatgggcataccattgaaacttgttataggaaacattgttttcatccaaattttggaaagaattctgctat 281  Q
    |||| |||||||||||||| || || |||||||  ||||||| ||||||| |||||| |||| ||||||| |||||  |||||||    
T  6755130 ctttttgtggtagaaatggccacacaattgaaagctgttataagaaacatggttttcctccacattttggtaagaaacctgctat 6755046  T

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Target: scaffold0164 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: scaffold0164
Description:

Target: scaffold0164; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 19 - 83
Target Start/End: Complemental strand, 18195 - 18131
Alignment:
Q  19 cctttacccactctcaacaagatcttttccatggttttgcaacatgagagacagttcaagatttc 83  Q
    |||||||| ||| |||| ||||| ||||| |||||| ||||||||||||||||||||||||||||    
T  18195 cctttaccaactatcaataagattttttctatggttatgcaacatgagagacagttcaagatttc 18131  T

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Target: scaffold0164; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 19 - 83
Target Start/End: Complemental strand, 28575 - 28511
Alignment:
Q  19 cctttacccactctcaacaagatcttttccatggttttgcaacatgagagacagttcaagatttc 83  Q
    |||||||| ||| |||| ||||| ||||| |||||| ||||||||||||||||||||||||||||    
T  28575 cctttaccaactatcaataagattttttctatggttatgcaacatgagagacagttcaagatttc 28511  T

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Target: scaffold0164; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 269
Target Start/End: Complemental strand, 18030 - 17954
Alignment:
Q  193 tgttctttatgtggtagaaatgggcataccattgaaacttgttataggaaacattgttttcatccaaattttggaaa 269  Q
    |||||||| ||||| ||| |||| || |||||||| |  ||||||||||||||| |||||| |||||||| ||||||    
T  18030 tgttctttctgtggcagagatggccacaccattgatatatgttataggaaacatggttttcctccaaattatggaaa 17954  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 19 - 83
Target Start/End: Original strand, 15191779 - 15191843
Alignment:
Q  19 cctttacccactctcaacaagatcttttccatggttttgcaacatgagagacagttcaagatttc 83  Q
    |||||||| ||| |||| ||||| ||||| |||||| ||||||||||||||||||||||||||||    
T  15191779 cctttaccaactatcaataagattttttctatggttatgcaacatgagagacagttcaagatttc 15191843  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 269
Target Start/End: Original strand, 15191944 - 15192020
Alignment:
Q  193 tgttctttatgtggtagaaatgggcataccattgaaacttgttataggaaacattgttttcatccaaattttggaaa 269  Q
    |||||||| ||||| ||| |||| || |||||||| |  ||||||||||||||| |||||| |||||||| ||||||    
T  15191944 tgttctttctgtggcagagatggccacaccattgatatatgttataggaaacatggttttcctccaaattatggaaa 15192020  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 19 - 83
Target Start/End: Original strand, 53976797 - 53976861
Alignment:
Q  19 cctttacccactctcaacaagatcttttccatggttttgcaacatgagagacagttcaagatttc 83  Q
    |||||||| ||| |||| ||||| ||||| |||||| ||||||||||||||||||||||||||||    
T  53976797 cctttaccaactatcaataagattttttctatggttatgcaacatgagagacagttcaagatttc 53976861  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 19 - 83
Target Start/End: Original strand, 18252627 - 18252691
Alignment:
Q  19 cctttacccactctcaacaagatcttttccatggttttgcaacatgagagacagttcaagatttc 83  Q
    |||||||| ||| | || ||||| ||||| |||||| ||||||||||||||||||||||||||||    
T  18252627 cctttaccaactatgaataagattttttctatggttatgcaacatgagagacagttcaagatttc 18252691  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 16255218 - 16255270
Alignment:
Q  19 cctttacccactctcaacaagatcttttccatggttttgcaacatgagagaca 71  Q
    |||||||| |||||||||||||| ||||| ||||| ||||| ||||| |||||    
T  16255218 cctttaccaactctcaacaagattttttcaatggtattgcagcatgaaagaca 16255270  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 26132138 - 26132190
Alignment:
Q  19 cctttacccactctcaacaagatcttttccatggttttgcaacatgagagaca 71  Q
    |||||||| |||||||||||||| ||||| ||||| ||||| ||||| |||||    
T  26132138 cctttaccaactctcaacaagattttttcaatggtattgcagcatgaaagaca 26132190  T

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