View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19192_low_75 (Length: 287)
Name: NF19192_low_75
Description: NF19192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19192_low_75 |
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Alignment Details
Target: chr8 (Bit Score: 238; Significance: 1e-132; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 282
Target Start/End: Complemental strand, 12945179 - 12944898
Alignment:
| Q |
1 |
gacagggaccacgagtattgcaatccaacaactttggatcacgtatacggtgaaaagataggacggttgccaaggtgttttgtaaatggctacggtggtg |
100 |
Q |
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| T |
12945179 |
gacagggaccacgagtattgcaatccaacaactttggatcacgtatacggtgaaaagattggacggttgccaaggtgctttgttaatggctacggtggag |
12945080 |
T |
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| Q |
101 |
atccattggtggataagcaaaaggagctggcgaagatttttgcagcacgcggggtgcacgtggagtcctgttttgatgaggatgggtatcatgctgtgga |
200 |
Q |
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| T |
12945079 |
atccattggtggataagcagaaggagctggcgaagattttggcggcacgtggggtgcacgtggagtcctgttttgatgaggatgggtatcatgctgtgga |
12944980 |
T |
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| Q |
201 |
aatctttgatcgttctaaggcacaagttttgcttgaaaatgttaagaaatttatactctctgctgtctctgctcctcctcaa |
282 |
Q |
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| T |
12944979 |
aatctttgatcgttctaaggcacaagttttgcttgaaaatgttaagaaatttatactctctgctgtttctgttgctcctcaa |
12944898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 49 - 254
Target Start/End: Complemental strand, 12937459 - 12937254
Alignment:
| Q |
49 |
ggtgaaaagataggacggttgccaaggtgttttgtaaatggctacggtggtgatccattggtggataagcaaaaggagctggcgaagatttttgcagcac |
148 |
Q |
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| T |
12937459 |
ggtgagaagatcggacggctgccgaggtgctttgttaacggctacggtggggatcccttggtggataggcaaaaggagctagtgaagattttggaggcac |
12937360 |
T |
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| Q |
149 |
gcggggtgcacgtggagtcctgttttgatgaggatgggtatcatgctgtggaaatctttgatcgttctaaggcacaagttttgcttgaaaatgttaagaa |
248 |
Q |
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| T |
12937359 |
gtggggtgcacgtggagtctgttttttgtgaggatgggtttcatgctgtggaactctttgatcctgctaaggcacaagcattacttgattacgttaagaa |
12937260 |
T |
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| Q |
249 |
atttat |
254 |
Q |
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|||||| |
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| T |
12937259 |
atttat |
12937254 |
T |
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