View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19192_low_78 (Length: 278)
Name: NF19192_low_78
Description: NF19192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19192_low_78 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 9 - 278
Target Start/End: Complemental strand, 31611857 - 31611588
Alignment:
| Q |
9 |
gaagaatatgctgaacatgaagaaagagttgaagcggaggctgctgtcgctgaagcaacaattgcacttgagagaattaataaagaaagagagatgttga |
108 |
Q |
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| T |
31611857 |
gaagaatatgctgaacatgaagaaagagttgaagcggaggctgctgtcgctgaagcaacaattgcatttgagagaattaataaagaaagagagatgttga |
31611758 |
T |
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| Q |
109 |
gaggatataagtaccgattccatcgttatttttatgatttgaatgaatggaagtatgttttgaatgaactaacatttcttagatttcagatacgttattt |
208 |
Q |
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| T |
31611757 |
gaggatataagtaccaattccgtcgttatttttatgatttgaatgaatgaaagtatgttttgaatgaactaacatttcttagatttcagatatgttattt |
31611658 |
T |
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| Q |
209 |
gaagtgaatcgtcaatgttactatgttatttgttaatttgttagtatttgcgggaggtgagaatcgaatc |
278 |
Q |
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| T |
31611657 |
gaagtgaatcgtcaatgttggtatgttatttgttaatttgttagtatttgcgggaggtgagaatcgaatc |
31611588 |
T |
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Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 222 - 267
Target Start/End: Original strand, 12549282 - 12549327
Alignment:
| Q |
222 |
aatgttactatgttatttgttaatttgttagtatttgcgggaggtg |
267 |
Q |
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| T |
12549282 |
aatgttaatatgttaattgttaatttgttagtatttgatggaggtg |
12549327 |
T |
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