View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19192_low_79 (Length: 277)
Name: NF19192_low_79
Description: NF19192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19192_low_79 |
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Alignment Details
Target: chr8 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 31611344 - 31611084
Alignment:
| Q |
1 |
tagtgtatatattgataacaatcaaggactaataatgcaatagttaataatgatagtatgataaaattatcattgtaatagttaataagggggccttagc |
100 |
Q |
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| T |
31611344 |
tagtgtatatattgataacaaacaaggactaataatgcaatagttaataatgatagtatgataaaattatcattgtaatagttaataagggggccttagc |
31611245 |
T |
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| Q |
101 |
gcaacggtaaagttgttgcattgaaaatttggggtaaatgatgagactcatccattaacaacacaggtttttgaagccatagtaagcctagatttgatgc |
200 |
Q |
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| T |
31611244 |
gcaacggtaaagttgttgcattgaaaatttggggtaaatgatgagactcatccattaacaacacaggtttttgaagccttagtaagcctagatttgatgc |
31611145 |
T |
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| Q |
201 |
cattttgtaggaggtggtaaatggtggacaaagggatgcaccatctaattgtattgaaaaa |
261 |
Q |
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| T |
31611144 |
cattttgtaggaggtggtaaatggtggacaaagggatgcaccatctaattatattgaaaaa |
31611084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 124 - 159
Target Start/End: Complemental strand, 31615787 - 31615752
Alignment:
| Q |
124 |
aaaatttggggtaaatgatgagactcatccattaac |
159 |
Q |
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| T |
31615787 |
aaaatttggggtaaatgatgaaactcatccattaac |
31615752 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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