View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19192_low_8 (Length: 700)
Name: NF19192_low_8
Description: NF19192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19192_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 591; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 591; E-Value: 0
Query Start/End: Original strand, 19 - 691
Target Start/End: Original strand, 828695 - 829370
Alignment:
| Q |
19 |
agagcgggttcttcgtttcaggagcggtgataccatacaccttaatcttagcaccaagttcttgagatgagaaatcatccagcatggcaagcacgtgttt |
118 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
828695 |
agagtgggttcttcgtttcaggagcggtgataccatactccttaatcttagcaccaagttcttgagatgagaaatcatccagcatggcaagcacgtgttt |
828794 |
T |
|
| Q |
119 |
gagctctgcagctttgtctgatgacaatgtgagatccttttgaagcttctcattgcaataatccttgagcaagtgatcagcacggtaacatgttccagtt |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
828795 |
gagctctgcagctttgtctgatgacaatgtgagatccttttgaagcttctcattgcaataatccttgagcaagtgatcagcacggtaacatgttccagtt |
828894 |
T |
|
| Q |
219 |
ttctcgtccttcaccatgagatcggtgaatttttccacgtggccggaagcttttagaacaacctctggtgtcacacagggacaatcaacctcaagcatgt |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
828895 |
ttctcgtccttcaccatgagatcggtgaatttttccacgtggccggaagcttttagaacaacctctggtgtcacacagggacaatcaacctcaagcatgt |
828994 |
T |
|
| Q |
319 |
tttcctccaaaacaaaatgctacatgcagc---acaacaacaacaacaataaaatttggatttgatctattaaaatttaatttaaaatactgttagcata |
415 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
828995 |
tttcctccaaaacaaaatgctacatgcagcacaacaacaacaacaacaataaaattcggatttgatctattaaaatttaatttaaaatactgttagcata |
829094 |
T |
|
| Q |
416 |
taacttttgattgaatgcatgtgcaaaacaaatttaatcttttggtatagaggaatcccacttagttggataaggcttgnnnnnnnnnnnnnnnnnattg |
515 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
829095 |
taacttttgattgaatgcacgtgcaaaacaaatttaatcttttggtatagaggaatcccacttagttggataaggcttggttgttgttgttgttgtattg |
829194 |
T |
|
| Q |
516 |
gcccataggaataatctacagtgttgtcaattgtggatcgtagaaatagtagtttgctcaaattctactacgctagaacgctatcttctaaatattgtat |
615 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
829195 |
gcccataggaataatctacagtgttgtcaattgtggatcgtagaaatagtagtttgctcaaattctactacgctagaacgctatcttctaaatattgtat |
829294 |
T |
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| Q |
616 |
catggaataataactacttgtataaattctaactctgcaataatgctactatttgttccttcctgagaagaataat |
691 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
829295 |
catggaataataactacttgtataaattctaactctgcaataatgctactatttgttccttcccgagaagaataat |
829370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 287; E-Value: 1e-160
Query Start/End: Original strand, 19 - 428
Target Start/End: Original strand, 835065 - 835475
Alignment:
| Q |
19 |
agagcgggttcttcgtttcaggagcggtgataccatacaccttaatcttagcaccaagttcttgagatgagaaatcatccagcatggcaagcacgtgttt |
118 |
Q |
| |
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|||| |||||||| ||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
835065 |
agagtgggttcttggtttcaggagcagtgataccatactccttaatcttagcaccaagttcttgagatgagaaaccatccagcatggcaagcacgtgttt |
835164 |
T |
|
| Q |
119 |
gagctctgcagctttgtctgatgacaatgtgagatccttttgaagcttctcattgcaataatccttgagcaagtgatcagcacggtaacatgttccagtt |
218 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| ||||||||||| ||||||||| |
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| T |
835165 |
cagctctgcagctttttctgatgacaatgtgagatcctcctgaagcttctgattgcaataatccttgagcaagtgatcggcacggtaacacgttccagtt |
835264 |
T |
|
| Q |
219 |
ttctcgtccttcaccatgagatcggtgaatttttccacgtggccggaagcttttagaacaacctctggtgtcacacagggacaatcaacctcaagcatgt |
318 |
Q |
| |
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|||||||||||||||||||||||||| || ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
835265 |
ttctcgtccttcaccatgagatcggtaaacttttccacgtggccggaagctttcagaacaacctctggtgtcacacagggacaatcaacctcaagcatct |
835364 |
T |
|
| Q |
319 |
tttcctccaaaacaaaatgctacatgcagcacaacaacaacaacaataaaatttggatttgatctattaaaatttaattta-aaatactgttagcatata |
417 |
Q |
| |
|
|||||||||| | |||||||||| ||||| |||||||||||| ||||| || ||||||||| ||||||||||||||||| | ||| |||||||||| | |
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| T |
835365 |
tttcctccaacataaaatgctaccagcagcccaacaacaacaaaaataactttaggatttgatttattaaaatttaatttatatatattgttagcataaa |
835464 |
T |
|
| Q |
418 |
acttttgattg |
428 |
Q |
| |
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||||||||||| |
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| T |
835465 |
acttttgattg |
835475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 532 - 590
Target Start/End: Complemental strand, 21202297 - 21202239
Alignment:
| Q |
532 |
tacagtgttgtcaattgtggatcgtagaaatagtagtttgctcaaattctactacgcta |
590 |
Q |
| |
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||||||||||| |||||||||||| ||||| || |||||| |||||||| |||| |||| |
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| T |
21202297 |
tacagtgttgtaaattgtggatcgcagaaaaagaagtttgttcaaattccactatgcta |
21202239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 27 - 342
Target Start/End: Original strand, 941053 - 941368
Alignment:
| Q |
27 |
ttcttcgtttcaggagcggtgataccatacaccttaatcttagcaccaagttcttgagatgagaaatcatccagcatggcaagcacgtgtttgagctctg |
126 |
Q |
| |
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||||| ||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| |
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| T |
941053 |
ttcttggtttcaggagctgtgataccatactccttaatcttagcaccaagttcttgagatgagaaatcgtccagcatggcaagcacgtgcttgagctctg |
941152 |
T |
|
| Q |
127 |
cagctttgtctgatgacaatgtgagatccttttgaagcttctcattgcaataatccttgagcaagtgatcagcacggtaacatgttccagttttctcgtc |
226 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| || || |||||||| || |
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| T |
941153 |
cagctttgtctgatgacaatgtgagatccttctgaagcttctcattgcaatagtccttgagcaagtgatcagcacggtaacaagtgccggttttctcatc |
941252 |
T |
|
| Q |
227 |
cttcaccatgagatcggtgaatttttccacgtggccggaagcttttagaacaacctctggtgtcacacagggacaatcaacctcaagcatgttttcctcc |
326 |
Q |
| |
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||||||||||||||| |||||||| |||||||| |||||||| || ||||||||||| || |||||| | |||||||||||||||||||||||||||||| |
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| T |
941253 |
cttcaccatgagatcagtgaatttctccacgtgaccggaagccttcagaacaacctccggcgtcacagatggacaatcaacctcaagcatgttttcctcc |
941352 |
T |
|
| Q |
327 |
aaaacaaaatgctaca |
342 |
Q |
| |
|
|||||||||||||||| |
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|
| T |
941353 |
aaaacaaaatgctaca |
941368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 555 - 587
Target Start/End: Complemental strand, 37985061 - 37985029
Alignment:
| Q |
555 |
gtagaaatagtagtttgctcaaattctactacg |
587 |
Q |
| |
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|||||||||| |||||||||||||||||||||| |
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| T |
37985061 |
gtagaaatagcagtttgctcaaattctactacg |
37985029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 532 - 590
Target Start/End: Complemental strand, 42201121 - 42201063
Alignment:
| Q |
532 |
tacagtgttgtcaattgtggatcgtagaaatagtagtttgctcaaattctactacgcta |
590 |
Q |
| |
|
||||||||||| |||||||||||| ||||| || |||||| |||||||| |||| |||| |
|
|
| T |
42201121 |
tacagtgttgtaaattgtggatcgcagaaaaagaagtttgttcaaattccactatgcta |
42201063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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