View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19192_low_81 (Length: 274)

Name: NF19192_low_81
Description: NF19192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19192_low_81
NF19192_low_81
[»] chr4 (3 HSPs)
chr4 (18-264)||(49351778-49352024)
chr4 (18-264)||(49340414-49340660)
chr4 (169-259)||(19030339-19030429)
[»] chr5 (1 HSPs)
chr5 (21-264)||(32784251-32784494)
[»] chr7 (9 HSPs)
chr7 (18-262)||(29743142-29743383)
chr7 (18-262)||(29602874-29603115)
chr7 (18-262)||(29750179-29750420)
chr7 (137-262)||(35958118-35958243)
chr7 (149-262)||(35939460-35939573)
chr7 (149-199)||(35982204-35982254)
chr7 (149-199)||(36003616-36003666)
chr7 (56-106)||(36273212-36273262)
chr7 (149-262)||(36221440-36221553)
[»] chr1 (1 HSPs)
chr1 (65-251)||(35157362-35157545)


Alignment Details
Target: chr4 (Bit Score: 239; Significance: 1e-132; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 18 - 264
Target Start/End: Original strand, 49351778 - 49352024
Alignment:
Q  18 aatcgtgttgtaaaaaggcgcgaattgacacattcatatgtgattggttctgatgtgataggaagggaacatgataaacaaaaaatcattgatatgttat 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49351778 aatcgtgttgtaaaaaggcgcgaattgacacattcatatgtgattgattctgatgtgataggaagggaacatgataaacaaaaaatcattgatatgttat 49351877  T
Q  118 tgcaagatagcggtgatagtaatagtctctctgttattcctgttgttggaattggaggattaggaaagactacacttgcaaaggcagtgtttaatgagaa 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  49351878 tgcaagatagcggtgatagtaatagtctctctgttattcctgttgttggaattggaggattaggaaagactacacttgcaaaggcagtgtttaatgataa 49351977  T
Q  218 gagtttagatgagacttttccattgaagatgtgggtgtgtgtctctg 264  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  49351978 gagtttagatgagacttttccattgaagatgtgggtgtgtgtctctg 49352024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 18 - 264
Target Start/End: Original strand, 49340414 - 49340660
Alignment:
Q  18 aatcgtgttgtaaaaaggcgcgaattgacacattcatatgtgattggttctgatgtgataggaagggaacatgataaacaaaaaatcattgatatgttat 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||  ||||||||||||||||||||||| || ||||||    
T  49340414 aatcgtgttgtaaaaaggcgcgaattgacacattcatatgtgattgattctgatgtgataggaagaaaacatgataaacaaaaaatcattaatctgttat 49340513  T
Q  118 tgcaagatagcggtgatagtaatagtctctctgttattcctgttgttggaattggaggattaggaaagactacacttgcaaaggcagtgtttaatgagaa 217  Q
    |||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||  ||||||||||| ||    
T  49340514 tgcaagatagtggtgatagtaatagtctctctgttattcctattgttggaattggaggattaggaaaaactacacttgcaaaggtcgtgtttaatgataa 49340613  T
Q  218 gagtttagatgagacttttccattgaagatgtgggtgtgtgtctctg 264  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  49340614 gagtttagatgagacttttccattgaagatgtgggtgtgtgtctctg 49340660  T

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Target: chr4; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 169 - 259
Target Start/End: Original strand, 19030339 - 19030429
Alignment:
Q  169 ttggaggattaggaaagactacacttgcaaaggcagtgtttaatgagaagagtttagatgagacttttccattgaagatgtgggtgtgtgt 259  Q
    |||||||||||||||| ||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  19030339 ttggaggattaggaaaaactacacttgcaaaggcagtgtttaatgttaagagtttagatgagacttttccattgaagatgtgggtgtgtgt 19030429  T

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Target: chr5 (Bit Score: 176; Significance: 7e-95; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 21 - 264
Target Start/End: Complemental strand, 32784494 - 32784251
Alignment:
Q  21 cgtgttgtaaaaaggcgcgaattgacacattcatatgtgattggttctgatgtgataggaagggaacatgataaacaaaaaatcattgatatgttattgc 120  Q
    |||||||||||||| || |||||||||||||||||||||| || ||||||||||||||||||  ||||||||||||||||||||||| ||  ||||||||    
T  32784494 cgtgttgtaaaaagacgtgaattgacacattcatatgtgaatgattctgatgtgataggaagaaaacatgataaacaaaaaatcattaatcagttattgc 32784395  T
Q  121 aagatagcggtgatagtaatagtctctctgttattcctgttgttggaattggaggattaggaaagactacacttgcaaaggcagtgtttaatgagaagag 220  Q
     |||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |||||    
T  32784394 tagatagtggtgatagtaatagtctctctgttattcctattgttggaattggaggattaggaaaaactacactttcaaaggcagtgtttaatgataagag 32784295  T
Q  221 tttagatgagacttttccattgaagatgtgggtgtgtgtctctg 264  Q
    |||||||||||||||| |||||||||||||||| ||||||||||    
T  32784294 tttagatgagactttttcattgaagatgtgggtttgtgtctctg 32784251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 119; Significance: 7e-61; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 18 - 262
Target Start/End: Original strand, 29743142 - 29743383
Alignment:
Q  18 aatcgtgttgtaaaaaggcgcgaattgacacattcatatgtgattggttctgatgtgataggaagggaacatgataaacaaaaaatcattgatatgttat 117  Q
    |||| ||||||||||||||| || ||||| |||||  |||| |||| |||||||||||||||||| ||| | |||||||| ||||| |||||| | ||||    
T  29743142 aatcatgttgtaaaaaggcgtgagttgactcattcgcatgtaattgattctgatgtgataggaagagaaaacgataaacacaaaattattgatctcttat 29743241  T
Q  118 tgcaagatagcggtgatagtaatagtctctctgttattcctgttgttggaattggaggattaggaaagactacacttgcaaaggcagtgtttaatgagaa 217  Q
    ||||||||||   ||||  ||| | |||||||||||||||| |||||||||||||||| || ||||||||||| ||||||||| ||||||| ||||| ||    
T  29743242 tgcaagatag---tgatcataaaattctctctgttattcctattgttggaattggaggcttgggaaagactacgcttgcaaagacagtgttcaatgataa 29743338  T
Q  218 gagtttagatgagacttttccattgaagatgtgggtgtgtgtctc 262  Q
    ||||||||| |||||||||||||| ||||||||||||||||||||    
T  29743339 gagtttagacgagacttttccattaaagatgtgggtgtgtgtctc 29743383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 18 - 262
Target Start/End: Complemental strand, 29603115 - 29602874
Alignment:
Q  18 aatcgtgttgtaaaaaggcgcgaattgacacattcatatgtgattggttctgatgtgataggaagggaacatgataaacaaaaaatcattgatatgttat 117  Q
    |||| ||||||||||||||| || ||||| |||||  ||||  ||| |||||||||||||||||||||  | ||||| |||||||| |||||| | ||||    
T  29603115 aatcatgttgtaaaaaggcgggagttgactcattcgcatgtagttgattctgatgtgataggaagggattacgataagcaaaaaattattgatctcttat 29603016  T
Q  118 tgcaagatagcggtgatagtaatagtctctctgttattcctgttgttggaattggaggattaggaaagactacacttgcaaaggcagtgtttaatgagaa 217  Q
    |||||||||| ||| |||   | |||||||||||||||||| |||||||||||||||| || ||||||||||||||||||||| | ||||| ||||| ||    
T  29603015 tgcaagatagtggtcata---aaagtctctctgttattcctattgttggaattggaggcttgggaaagactacacttgcaaagacggtgttcaatgataa 29602919  T
Q  218 gagtttagatgagacttttccattgaagatgtgggtgtgtgtctc 262  Q
    ||||||||| |||||||| ||||| ||||||||||||||||||||    
T  29602918 gagtttagacgagactttcccattaaagatgtgggtgtgtgtctc 29602874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 18 - 262
Target Start/End: Original strand, 29750179 - 29750420
Alignment:
Q  18 aatcgtgttgtaaaaaggcgcgaattgacacattcatatgtgattggttctgatgtgataggaagggaacatgataaacaaaaaatcattgatatgttat 117  Q
    |||| ||||||||||||||| || ||||| |||||  ||||  ||| |||||||||||||||||||||  | ||||| |||||||| |||||| | ||||    
T  29750179 aatcatgttgtaaaaaggcgggagttgactcattcgcatgtagttgattctgatgtgataggaagggattacgataagcaaaaaattattgatctcttat 29750278  T
Q  118 tgcaagatagcggtgatagtaatagtctctctgttattcctgttgttggaattggaggattaggaaagactacacttgcaaaggcagtgtttaatgagaa 217  Q
    |||||||||| ||| |||   | |||||||||||||||||| |||||||||||||||| || ||||||||||||||||||||| | ||||| ||||| ||    
T  29750279 tgcaagatagtggtcata---aaagtctctctgttattcctattgttggaattggaggcttgggaaagactacacttgcaaagacggtgttcaatgataa 29750375  T
Q  218 gagtttagatgagacttttccattgaagatgtgggtgtgtgtctc 262  Q
    ||||||||| ||||| |||||||| ||||||||||||||||||||    
T  29750376 gagtttagacgagacatttccattaaagatgtgggtgtgtgtctc 29750420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 137 - 262
Target Start/End: Complemental strand, 35958243 - 35958118
Alignment:
Q  137 taatagtctctctgttattcctgttgttggaattggaggattaggaaagactacacttgcaaaggcagtgtttaatgagaagagtttagatgagactttt 236  Q
    ||||||||||| ||| |||||  | || ||||||||||| || |||||||| |||||||||||| | ||||| ||||| |||||  | ||| | ||||||    
T  35958243 taatagtctctgtgtcattccaatagtgggaattggaggtttgggaaagacaacacttgcaaagtcggtgttcaatgataagaggatggatca-actttt 35958145  T
Q  237 cca-ttgaagatgtgggtgtgtgtctc 262  Q
    ||| |||||||||||||||||| ||||    
T  35958144 ccagttgaagatgtgggtgtgtatctc 35958118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 149 - 262
Target Start/End: Complemental strand, 35939573 - 35939460
Alignment:
Q  149 tgttattcctgttgttggaattggaggattaggaaagactacacttgcaaaggcagtgtttaatgagaagagtttagatgagacttttcc-attgaagat 247  Q
    |||||||||  |||| ||||||||||||||||| ||||| ||||||||||||   ||||| ||||| |||||  |  || | |||||||| |||||||||    
T  35939573 tgttattcccattgtgggaattggaggattagggaagaccacacttgcaaagttggtgttcaatgataagagggtgaatca-acttttccaattgaagat 35939475  T
Q  248 gtgggtgtgtgtctc 262  Q
    |||| ||||||||||    
T  35939474 gtggttgtgtgtctc 35939460  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 199
Target Start/End: Complemental strand, 35982254 - 35982204
Alignment:
Q  149 tgttattcctgttgttggaattggaggattaggaaagactacacttgcaaa 199  Q
    |||||||||  |||| ||||||||||| || ||||||||||||||||||||    
T  35982254 tgttattcccattgtgggaattggaggtttgggaaagactacacttgcaaa 35982204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 199
Target Start/End: Complemental strand, 36003666 - 36003616
Alignment:
Q  149 tgttattcctgttgttggaattggaggattaggaaagactacacttgcaaa 199  Q
    |||||||||  |||| ||||||||||| || ||||||||||||||||||||    
T  36003666 tgttattcccattgtgggaattggaggtttgggaaagactacacttgcaaa 36003616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 106
Target Start/End: Original strand, 36273212 - 36273262
Alignment:
Q  56 tgtgattggttctgatgtgataggaagggaacatgataaacaaaaaatcat 106  Q
    |||||||  ||| ||||||||||||||||||||||||||| |||| |||||    
T  36273212 tgtgattaattcagatgtgataggaagggaacatgataaagaaaagatcat 36273262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 149 - 262
Target Start/End: Original strand, 36221440 - 36221553
Alignment:
Q  149 tgttattcctgttgttggaattggaggattaggaaagactacacttgcaaaggcagtgtttaatgagaagagtttagatgagacttttccattgaagatg 248  Q
    |||||||||  | ||||||||||| || || || ||||| |||||||||| |   ||||| ||||| |||||  ||||||| | ||| | |||||||||     
T  36221440 tgttattcccatagttggaattggtggcttggggaagaccacacttgcaaggttggtgttcaatgataagaggatagatgatattttccaattgaagatt 36221539  T
Q  249 tgggtgtgtgtctc 262  Q
    ||||||||||||||    
T  36221540 tgggtgtgtgtctc 36221553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 65 - 251
Target Start/End: Original strand, 35157362 - 35157545
Alignment:
Q  65 ttctgatgtgataggaagggaacatgataaacaaaaaatcattgatatgttattgcaagatagcggtgatagtaatagtctctctgttattcctgttgtt 164  Q
    |||||||||||||||||||||||| |||||||| |||||  | ||  | |||||  | ||||| | |||||  |||   || |||||| || || ||||     
T  35157362 ttctgatgtgataggaagggaacaagataaacagaaaattgtagaactcttattcgacgatagtgatgataaaaat---ctatctgttgttgctattgtg 35157458  T
Q  165 ggaattggaggattaggaaagactacacttgcaaaggcagtgtttaatgagaagagtttagatgagacttttccattgaagatgtgg 251  Q
    ||| |||||||  | |||||||||||||||||||| |  ||||||||||| |||||| ||| |||  |||||||||| |||||||||    
T  35157459 ggacttggaggtatgggaaagactacacttgcaaaagttgtgtttaatgataagagtgtagttgactcttttccattaaagatgtgg 35157545  T

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