View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19192_low_86 (Length: 261)
Name: NF19192_low_86
Description: NF19192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19192_low_86 |
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Alignment Details
Target: chr5 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 56 - 252
Target Start/End: Complemental strand, 13761522 - 13761327
Alignment:
| Q |
56 |
gagtattaattagtgttgggttactatttgtgaaaaaacagtcaattcccaatattttttgagtgaaatttatatgattaaaaacaatacaaattnnnnn |
155 |
Q |
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| T |
13761522 |
gagtattaattagtgttgggttactatttgtgaaaaaa-agttgattcccaatattttttgagtgaaatttatatgattaaaaacaatacaaattaaaaa |
13761424 |
T |
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| Q |
156 |
nntcatgcggtggtgttggataaatgaagggaagggaaggtcttcgtggtagagagggtggaaggagatgtagtgggtgggtcatgtcttgatgatg |
252 |
Q |
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| T |
13761423 |
aatcatgcggtggtgttggataaatgaagggaagggaaggtcttcgtggtagggagggtggaaggagatgcagtgggtgggtcatgtcttgatgatg |
13761327 |
T |
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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 62
Target Start/End: Complemental strand, 44854299 - 44854265
Alignment:
| Q |
28 |
taaaataacactcatcttaaaacggatggagtatt |
62 |
Q |
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| T |
44854299 |
taaaataacactcattttaaaacggatggagtatt |
44854265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 66
Target Start/End: Original strand, 32228175 - 32228215
Alignment:
| Q |
26 |
gctaaaataacactcatcttaaaacggatggagtattaatt |
66 |
Q |
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| T |
32228175 |
gctaaaacgacactcattttaaaacggatggagtattaatt |
32228215 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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