View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19193_high_12 (Length: 501)
Name: NF19193_high_12
Description: NF19193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19193_high_12 |
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Alignment Details
Target: chr3 (Bit Score: 476; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 476; E-Value: 0
Query Start/End: Original strand, 1 - 488
Target Start/End: Complemental strand, 53463330 - 53462843
Alignment:
| Q |
1 |
aaaataaattctaaaaacgtaatcataaattcatttccttcaacagttccaaacaaaacaacatttttggatcactacattagcagctactaataattca |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53463330 |
aaaataaattctaaaaacgtaatcataaattcatttccttcaacagttccaaaaaaaacaacatttttggatcactacattagcagctactaataattca |
53463231 |
T |
|
| Q |
101 |
caataaaacaaaataaacctaaaattagaacataagttatttgtaataacccttctatccttctgccgcacgccgcttcatttgcatatacacagtaaaa |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53463230 |
caataaaacaaaataaacctaaaattagaacataagttatttgtaataacccttctatccttctgccgcacgccgcttcatttgcatatacacagtaaaa |
53463131 |
T |
|
| Q |
201 |
tgcgacaatttcagaaagttaccgcagtaactacggcaatttcttataattttatctcaatatcaagattttcgtgcacaactgtataacaatgtcatga |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53463130 |
tgcgacaatttcagaaagttaccgcagtaactacggcaatttcttataattttatctcaatatcaagattttcgtgcacaactgtataacaatgtcatga |
53463031 |
T |
|
| Q |
301 |
agtgcatgtttaatatcgcaacgatgatcagagtaattcatgttattctgatataaacatgccccaatgaattttgatcgatcgttcagcagggactctc |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
53463030 |
agtgcatgtttaatatcgcaacgatgatcagagtaattcatgttattctgatataaacatgcaccaatgaattttgatcgatcgttcagcagggactctc |
53462931 |
T |
|
| Q |
401 |
agaattgagactctgagggtcaagttttgctctacatagaggacacatagggtgtttggagagccacgtgtcggcacattggtgatga |
488 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
53462930 |
agaattgagactctgagggtcaagttttgctctacatagaggacacatagggtgtttggagagccacgtgtcggcacattggagatga |
53462843 |
T |
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