View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19193_high_14 (Length: 477)

Name: NF19193_high_14
Description: NF19193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19193_high_14
NF19193_high_14
[»] chr2 (25 HSPs)
chr2 (67-469)||(45367214-45367619)
chr2 (2-42)||(227414-227454)
chr2 (2-42)||(522454-522494)
chr2 (2-42)||(3635340-3635380)
chr2 (2-42)||(4807820-4807860)
chr2 (2-42)||(12474944-12474984)
chr2 (2-42)||(17670693-17670733)
chr2 (2-42)||(25834903-25834943)
chr2 (2-42)||(28508903-28508943)
chr2 (2-42)||(30306257-30306297)
chr2 (2-42)||(41763060-41763100)
chr2 (3-42)||(8181006-8181045)
chr2 (4-42)||(38328387-38328425)
chr2 (1-43)||(45367641-45367683)
chr2 (2-39)||(451668-451705)
chr2 (6-43)||(19336909-19336946)
chr2 (2-42)||(3243670-3243710)
chr2 (2-42)||(7326177-7326217)
chr2 (6-42)||(9531617-9531653)
chr2 (6-42)||(12520079-12520115)
chr2 (6-42)||(16521024-16521060)
chr2 (2-42)||(38430109-38430149)
chr2 (6-42)||(38435181-38435217)
chr2 (2-42)||(41197244-41197284)
chr2 (6-42)||(43573147-43573183)
[»] chr6 (21 HSPs)
chr6 (238-445)||(432132-432336)
chr6 (69-205)||(432415-432550)
chr6 (1-42)||(30679620-30679661)
chr6 (1-42)||(30789091-30789132)
chr6 (2-42)||(3206476-3206516)
chr6 (2-42)||(31819056-31819096)
chr6 (2-38)||(32756146-32756182)
chr6 (3-42)||(28085602-28085641)
chr6 (4-42)||(9706997-9707035)
chr6 (4-42)||(34934847-34934885)
chr6 (6-43)||(579647-579684)
chr6 (1-42)||(608385-608426)
chr6 (1-42)||(5897681-5897722)
chr6 (6-43)||(32068649-32068686)
chr6 (3-35)||(413309-413341)
chr6 (6-42)||(5096063-5096099)
chr6 (2-42)||(5258165-5258205)
chr6 (6-42)||(12890804-12890840)
chr6 (6-42)||(18130831-18130867)
chr6 (2-42)||(34143782-34143822)
chr6 (2-42)||(34156398-34156438)
[»] chr5 (25 HSPs)
chr5 (4-43)||(2393104-2393143)
chr5 (3-42)||(39040982-39041021)
chr5 (1-42)||(1275488-1275529)
chr5 (2-42)||(408511-408551)
chr5 (2-42)||(2915513-2915553)
chr5 (2-42)||(3302069-3302109)
chr5 (2-42)||(13561403-13561443)
chr5 (2-42)||(14911397-14911437)
chr5 (2-42)||(20456998-20457038)
chr5 (2-42)||(29816607-29816647)
chr5 (2-42)||(30213800-30213840)
chr5 (2-42)||(38685192-38685232)
chr5 (6-42)||(39322096-39322132)
chr5 (4-42)||(4496611-4496649)
chr5 (2-42)||(1287596-1287636)
chr5 (6-42)||(5558370-5558406)
chr5 (6-42)||(7640524-7640560)
chr5 (7-43)||(7678707-7678743)
chr5 (2-42)||(10639527-10639567)
chr5 (2-42)||(12492401-12492441)
chr5 (2-42)||(16347397-16347437)
chr5 (6-42)||(18855836-18855872)
chr5 (6-42)||(27386569-27386605)
chr5 (2-42)||(28976876-28976916)
chr5 (2-42)||(42272702-42272742)
[»] chr7 (34 HSPs)
chr7 (1-42)||(33073153-33073194)
chr7 (2-42)||(6375093-6375133)
chr7 (2-42)||(11594185-11594225)
chr7 (2-42)||(12841292-12841332)
chr7 (2-42)||(28208345-28208385)
chr7 (2-42)||(29650609-29650649)
chr7 (2-42)||(31682619-31682659)
chr7 (2-42)||(31869119-31869159)
chr7 (2-42)||(33349823-33349863)
chr7 (2-42)||(35906218-35906258)
chr7 (2-42)||(36652217-36652257)
chr7 (2-42)||(39906389-39906429)
chr7 (2-42)||(45836499-45836539)
chr7 (2-42)||(48919337-48919377)
chr7 (3-42)||(31005431-31005470)
chr7 (3-42)||(37618171-37618210)
chr7 (1-43)||(24777185-24777227)
chr7 (2-40)||(34035173-34035211)
chr7 (1-42)||(7273324-7273365)
chr7 (9-42)||(36869254-36869287)
chr7 (2-39)||(40630659-40630696)
chr7 (2-39)||(43281899-43281936)
chr7 (6-42)||(2885739-2885775)
chr7 (6-42)||(6263488-6263524)
chr7 (2-42)||(22349845-22349885)
chr7 (6-42)||(27649009-27649045)
chr7 (6-42)||(28708610-28708646)
chr7 (2-42)||(32631789-32631829)
chr7 (6-42)||(33732061-33732097)
chr7 (6-42)||(34926539-34926575)
chr7 (2-42)||(38900182-38900221)
chr7 (6-42)||(40979945-40979981)
chr7 (6-42)||(42187670-42187706)
chr7 (6-42)||(42969927-42969963)
[»] chr4 (32 HSPs)
chr4 (1-42)||(6957822-6957863)
chr4 (1-42)||(27983417-27983458)
chr4 (2-42)||(1777034-1777074)
chr4 (2-42)||(4441078-4441118)
chr4 (2-42)||(19969406-19969446)
chr4 (2-42)||(27450197-27450237)
chr4 (2-42)||(31959831-31959871)
chr4 (2-42)||(49939751-49939791)
chr4 (2-42)||(50238632-50238672)
chr4 (2-42)||(50238718-50238758)
chr4 (2-42)||(52569532-52569572)
chr4 (7-42)||(8598913-8598948)
chr4 (4-42)||(436456-436494)
chr4 (1-42)||(8286663-8286704)
chr4 (5-42)||(21528516-21528553)
chr4 (1-30)||(33227433-33227462)
chr4 (1-42)||(51811296-51811336)
chr4 (1-42)||(55007970-55008011)
chr4 (1-42)||(56375514-56375555)
chr4 (6-42)||(1211409-1211445)
chr4 (6-42)||(7544548-7544584)
chr4 (6-42)||(7947166-7947202)
chr4 (6-42)||(15661889-15661925)
chr4 (2-42)||(19061952-19061992)
chr4 (2-42)||(23906314-23906354)
chr4 (6-42)||(30634123-30634159)
chr4 (1-41)||(32613654-32613694)
chr4 (6-42)||(35690500-35690536)
chr4 (2-42)||(43434149-43434189)
chr4 (2-42)||(48174110-48174150)
chr4 (2-42)||(48622560-48622600)
chr4 (6-42)||(50862860-50862896)
[»] chr3 (23 HSPs)
chr3 (2-42)||(7895897-7895937)
chr3 (1-43)||(7278688-7278730)
chr3 (1-42)||(28245661-28245702)
chr3 (2-42)||(5169057-5169097)
chr3 (2-42)||(12096722-12096762)
chr3 (2-42)||(25191602-25191642)
chr3 (341-373)||(41816081-41816113)
chr3 (3-42)||(31566178-31566217)
chr3 (2-43)||(22297-22338)
chr3 (2-39)||(40273225-40273262)
chr3 (1-42)||(52139024-52139065)
chr3 (1-42)||(53519804-53519845)
chr3 (2-35)||(54279245-54279278)
chr3 (2-42)||(311326-311366)
chr3 (6-42)||(24778626-24778662)
chr3 (6-42)||(38060943-38060979)
chr3 (6-42)||(41529990-41530026)
chr3 (2-42)||(45834617-45834657)
chr3 (2-42)||(47555349-47555389)
chr3 (6-42)||(48508464-48508500)
chr3 (2-42)||(52156101-52156141)
chr3 (6-42)||(52927865-52927901)
chr3 (2-42)||(53262366-53262406)
[»] chr1 (36 HSPs)
chr1 (2-42)||(9592959-9592999)
chr1 (2-42)||(34792366-34792406)
chr1 (1-42)||(3777277-3777318)
chr1 (1-42)||(28533691-28533732)
chr1 (2-42)||(1210970-1211010)
chr1 (2-42)||(6025830-6025870)
chr1 (2-42)||(25979248-25979288)
chr1 (2-42)||(29577477-29577517)
chr1 (2-42)||(30202147-30202187)
chr1 (2-42)||(38877360-38877400)
chr1 (2-42)||(46423233-46423273)
chr1 (2-42)||(49347410-49347450)
chr1 (2-42)||(52921305-52921345)
chr1 (5-42)||(4029350-4029387)
chr1 (2-39)||(4318865-4318902)
chr1 (1-42)||(15086146-15086187)
chr1 (1-42)||(22090320-22090361)
chr1 (2-39)||(37311775-37311812)
chr1 (2-39)||(41165507-41165544)
chr1 (6-43)||(43375614-43375651)
chr1 (2-42)||(696495-696535)
chr1 (6-42)||(4590549-4590585)
chr1 (6-42)||(10200323-10200359)
chr1 (6-42)||(22175374-22175410)
chr1 (6-42)||(26299297-26299333)
chr1 (6-42)||(28090711-28090747)
chr1 (3-39)||(32082776-32082812)
chr1 (6-42)||(32404543-32404579)
chr1 (6-42)||(37429916-37429952)
chr1 (6-42)||(37462893-37462929)
chr1 (6-42)||(41560458-41560494)
chr1 (6-42)||(43481815-43481851)
chr1 (2-42)||(44751709-44751749)
chr1 (6-42)||(44941793-44941829)
chr1 (2-42)||(51602281-51602321)
chr1 (6-42)||(52561606-52561642)
[»] scaffold0024 (1 HSPs)
scaffold0024 (1-42)||(82942-82983)
[»] chr8 (16 HSPs)
chr8 (1-42)||(36545373-36545414)
chr8 (2-42)||(11523740-11523780)
chr8 (2-42)||(12491155-12491195)
chr8 (2-42)||(14742099-14742139)
chr8 (2-42)||(25473420-25473460)
chr8 (7-42)||(26055651-26055686)
chr8 (1-43)||(37077973-37078015)
chr8 (4-42)||(44529452-44529490)
chr8 (1-42)||(30689959-30690000)
chr8 (6-42)||(490564-490600)
chr8 (6-42)||(1928604-1928640)
chr8 (6-42)||(36565258-36565294)
chr8 (2-42)||(42469744-42469784)
chr8 (2-42)||(42854021-42854061)
chr8 (2-42)||(44047549-44047589)
chr8 (6-42)||(45419464-45419500)
[»] scaffold1318 (1 HSPs)
scaffold1318 (2-42)||(556-596)
[»] scaffold0168 (1 HSPs)
scaffold0168 (2-42)||(28906-28946)
[»] scaffold0018 (1 HSPs)
scaffold0018 (3-42)||(31694-31733)
[»] scaffold0113 (1 HSPs)
scaffold0113 (1-42)||(11566-11607)


Alignment Details
Target: chr2 (Bit Score: 367; Significance: 0; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 67 - 469
Target Start/End: Complemental strand, 45367619 - 45367214
Alignment:
Q  67 atgcattcattcatcttcactctattttattttcaccacacacaaatacaaatattcaagtaaaaa-ctcaattttgtcattcagaattttttcacagtt 165  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  45367619 atgcattcattcatcttcactctattttattttcaccacacacaaatacaaatattcaagtaaaaaactcaattttgtcattcagaattttttcacagtt 45367520  T
Q  166 caatttagtcttcttttcaaaataatgaccaaattatacaagaggaacaaattagtctagttttattttgtca--ctaaattggattgcgagaaaattgt 263  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||    
T  45367519 caatttagtctttttttcaaaataatgaccaaattatacaagaggaacaaattagtctagttttattttgtcagactaaattggattgcgagaaaattgt 45367420  T
Q  264 agaaccaaagtgtgtcttcactctgaatattagtccactgataagctgaggcacgacacttggacatgctaaattcctaggttgctttctctccctattt 363  Q
    ||||||||| || ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  45367419 agaaccaaattgggtcttcactctgaatattagtccactgataagctgaggcacaacacttggacatgctaaattcctaggttgctttctctccctattt 45367320  T
Q  364 tgtttaacacttcttgcttggtttctttacagattcattcaaaccaaaacctatgaagctcatcaacataaatgggttcactctacaattgcttcgaaag 463  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  45367319 tgtttaacacttcttgcttggtttctttacagattcattcaaaccaaaacctatgaagctcatcaacataaatgggttcactctagaattgcttcgaaag 45367220  T
Q  464 tataat 469  Q
    ||||||    
T  45367219 tataat 45367214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 227414 - 227454
Alignment:
Q  2 cgtcatttgatccatgtagccgatcccacttaatgggataa 42  Q
    ||||||||||||||||||||||| |||||||| ||||||||    
T  227414 cgtcatttgatccatgtagccgaccccacttagtgggataa 227454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 522454 - 522494
Alignment:
Q  2 cgtcatttgatccatgtagccgatcccacttaatgggataa 42  Q
    |||||||||||||||||||| |||| |||||||||||||||    
T  522454 cgtcatttgatccatgtagcagatcacacttaatgggataa 522494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 3635380 - 3635340
Alignment:
Q  2 cgtcatttgatccatgtagccgatcccacttaatgggataa 42  Q
    ||||||||||||||||||||||| |||||||| ||||||||    
T  3635380 cgtcatttgatccatgtagccgaccccacttagtgggataa 3635340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 4807820 - 4807860
Alignment:
Q  2 cgtcatttgatccatgtagccgatcccacttaatgggataa 42  Q
    ||||||||||||||||||||||| |||||||| ||||||||    
T  4807820 cgtcatttgatccatgtagccgaccccacttagtgggataa 4807860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 12474984 - 12474944
Alignment:
Q  2 cgtcatttgatccatgtagccgatcccacttaatgggataa 42  Q
    ||||||||||||||||||||||| |||||||| ||||||||    
T  12474984 cgtcatttgatccatgtagccgaccccacttagtgggataa 12474944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 17670693 - 17670733
Alignment:
Q  2 cgtcatttgatccatgtagccgatcccacttaatgggataa 42  Q
    ||||||||||||||||||||||| |||||||| ||||||||    
T  17670693 cgtcatttgatccatgtagccgaccccacttagtgggataa 17670733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 25834903 - 25834943
Alignment:
Q  2 cgtcatttgatccatgtagccgatcccacttaatgggataa 42  Q
    ||||||||||||||||||||||| |||||||| ||||||||    
T  25834903 cgtcatttgatccatgtagccgaccccacttagtgggataa 25834943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 28508903 - 28508943
Alignment:
Q  2 cgtcatttgatccatgtagccgatcccacttaatgggataa 42  Q
    ||||||||||||||||||||||| |||||||| ||||||||    
T  28508903 cgtcatttgatccatgtagccgaccccacttagtgggataa 28508943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 30306257 - 30306297
Alignment:
Q  2 cgtcatttgatccatgtagccgatcccacttaatgggataa 42  Q
    ||||||||||||||||||||||| |||||||| ||||||||    
T  30306257 cgtcatttgatccatgtagccgaccccacttagtgggataa 30306297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 41763100 - 41763060
Alignment:
Q  2 cgtcatttgatccatgtagccgatcccacttaatgggataa 42  Q
    ||||||||||||||||||||||| |||||||| ||||||||    
T  41763100 cgtcatttgatccatgtagccgaccccacttagtgggataa 41763060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 3 - 42
Target Start/End: Original strand, 8181006 - 8181045
Alignment:
Q  3 gtcatttgatccatgtagccgatcccacttaatgggataa 42  Q
    |||||||||||||||||||||| |||||||| ||||||||    
T  8181006 gtcatttgatccatgtagccgaccccacttagtgggataa 8181045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 4 - 42
Target Start/End: Complemental strand, 38328425 - 38328387
Alignment:
Q  4 tcatttgatccatgtagccgatcccacttaatgggataa 42  Q
    ||||||||||||||||||||| |||||||| ||||||||    
T  38328425 tcatttgatccatgtagccgaccccacttagtgggataa 38328387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 45367683 - 45367641
Alignment:
Q  1 acgtcatttgatccatgtagccgatcccacttaatgggataaa 43  Q
    |||||||||||||||||| ||||| |||||||| |||||||||    
T  45367683 acgtcatttgatccatgtcgccgaccccacttagtgggataaa 45367641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 39
Target Start/End: Complemental strand, 451705 - 451668
Alignment:
Q  2 cgtcatttgatccatgtagccgatcccacttaatggga 39  Q
    ||||||||||||||||||||||| |||||||| |||||    
T  451705 cgtcatttgatccatgtagccgaccccacttagtggga 451668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 6 - 43
Target Start/End: Complemental strand, 19336946 - 19336909
Alignment:
Q  6 atttgatccatgtagccgatcccacttaatgggataaa 43  Q
    ||||||||||||||||| |||||||||| |||||||||    
T  19336946 atttgatccatgtagccaatcccacttattgggataaa 19336909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 3243710 - 3243670
Alignment:
Q  2 cgtcatttgatccatgtagccgatcccacttaatgggataa 42  Q
    |||||||||||||| |||||||| |||||||| ||||||||    
T  3243710 cgtcatttgatccaggtagccgaccccacttagtgggataa 3243670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 7326217 - 7326177
Alignment:
Q  2 cgtcatttgatccatgtagccgatcccacttaatgggataa 42  Q
    ||||||||||||||||||||| | |||||||| ||||||||    
T  7326217 cgtcatttgatccatgtagccaaccccacttagtgggataa 7326177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 6 - 42
Target Start/End: Complemental strand, 9531653 - 9531617
Alignment:
Q  6 atttgatccatgtagccgatcccacttaatgggataa 42  Q
    ||||||||||||||||||| |||||||| ||||||||    
T  9531653 atttgatccatgtagccgaccccacttagtgggataa 9531617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 6 - 42
Target Start/End: Complemental strand, 12520115 - 12520079
Alignment:
Q  6 atttgatccatgtagccgatcccacttaatgggataa 42  Q
    ||||||||||||||||||| |||||||| ||||||||    
T  12520115 atttgatccatgtagccgaccccacttagtgggataa 12520079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 6 - 42
Target Start/End: Complemental strand, 16521060 - 16521024
Alignment:
Q  6 atttgatccatgtagccgatcccacttaatgggataa 42  Q
    ||||||||||||||||||| |||||||| ||||||||    
T  16521060 atttgatccatgtagccgaccccacttagtgggataa 16521024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 38430109 - 38430149
Alignment:
Q  2 cgtcatttgatccatgtagccgatcccacttaatgggataa 42  Q
    ||||||||||||||||||||||| |||||||| || |||||    
T  38430109 cgtcatttgatccatgtagccgaccccacttagtgagataa 38430149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 6 - 42
Target Start/End: Original strand, 38435181 - 38435217
Alignment:
Q  6 atttgatccatgtagccgatcccacttaatgggataa 42  Q
    |||||||||||||||||||||||||||| ||| ||||    
T  38435181 atttgatccatgtagccgatcccacttagtggcataa 38435217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 41197284 - 41197244
Alignment:
Q  2 cgtcatttgatccatgtagccgatcccacttaatgggataa 42  Q
    ||||||||||||||||||| ||| ||||||| |||||||||    
T  41197284 cgtcatttgatccatgtagtcgaccccacttgatgggataa 41197244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 6 - 42
Target Start/End: Complemental strand, 43573183 - 43573147
Alignment:
Q  6 atttgatccatgtagccgatcccacttaatgggataa 42  Q
    ||||||||||||||||||| |||||||| ||||||||    
T  43573183 atttgatccatgtagccgaccccacttagtgggataa 43573147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 145; Significance: 4e-76; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 238 - 445
Target Start/End: Complemental strand, 432336 - 432132
Alignment:
Q  238 actaaattggattgcgagaaaattgtagaaccaaagtgtgtcttcactctgaatattagtccactgataagctgaggcacgacacttggacatgctaaat 337  Q
    |||||||||| ||||||||||||||||  |||||| || |||||||||| |||||||||| ||||||||||||||||||  ||||| |||||||| ||||    
T  432336 actaaattgggttgcgagaaaattgtaagaccaaattg-gtcttcactccgaatattagtacactgataagctgaggca--acactaggacatgccaaat 432240  T
Q  338 tcctaggttgctttctctccctattttgtttaacacttcttgcttggtttctttacagattcattcaaaccaaaacctatgaagctcatcaacataaatg 437  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  432239 tcctaggttgctttctctccctattttgtttagcacttcttgcttggtttctttacagattcattcaaaccaaaagctatgaagctcatcaacataaatg 432140  T
Q  438 ggttcact 445  Q
    ||| ||||    
T  432139 ggtccact 432132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 69 - 205
Target Start/End: Complemental strand, 432550 - 432415
Alignment:
Q  69 gcattcattcatcttcactctattttattttcaccacacacaaatacaaatattcaagtaaaaactcaattttgtcattcagaattttttcacagttcaa 168  Q
    ||||||||||||||||||||||||| |||||||||||||||||| ||||||||| ||||||||||||||||| ||| |||| |||||| || ||||||||    
T  432550 gcattcattcatcttcactctattt-attttcaccacacacaaacacaaatattaaagtaaaaactcaatttcgtccttcacaattttctcgcagttcaa 432452  T
Q  169 tttagtcttcttttcaaaataatgaccaaattataca 205  Q
    ||||||||| |  |||||||||| |||||||||||||    
T  432451 tttagtcttttactcaaaataattaccaaattataca 432415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 30679620 - 30679661
Alignment:
Q  1 acgtcatttgatccatgtagccgatcccacttaatgggataa 42  Q
    ||||||||||||| ||||||||||||||||||||||||||||    
T  30679620 acgtcatttgatctatgtagccgatcccacttaatgggataa 30679661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 30789132 - 30789091
Alignment:
Q  1 acgtcatttgatccatgtagccgatcccacttaatgggataa 42  Q
    ||||||||||||||||||||||||||| ||||| ||||||||    
T  30789132 acgtcatttgatccatgtagccgatcctacttagtgggataa 30789091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 3206516 - 3206476
Alignment:
Q  2 cgtcatttgatccatgtagccgatcccacttaatgggataa 42  Q
    ||||||||||||||||||||||| |||||||| ||||||||    
T  3206516 cgtcatttgatccatgtagccgaccccacttagtgggataa 3206476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 31819056 - 31819096
Alignment:
Q  2 cgtcatttgatccatgtagccgatcccacttaatgggataa 42  Q
    ||||||||||||||||||||||| |||||||| ||||||||    
T  31819056 cgtcatttgatccatgtagccgaccccacttagtgggataa 31819096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 2 - 38
Target Start/End: Original strand, 32756146 - 32756182
Alignment:
Q  2 cgtcatttgatccatgtagccgatcccacttaatggg 38  Q
    |||||||||||||||||||||||||||||||| ||||    
T  32756146 cgtcatttgatccatgtagccgatcccacttagtggg 32756182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 3 - 42
Target Start/End: Original strand, 28085602 - 28085641
Alignment:
Q  3 gtcatttgatccatgtagccgatcccacttaatgggataa 42  Q
    |||||||||||||||||||||| |||||||| ||||||||    
T  28085602 gtcatttgatccatgtagccgaccccacttagtgggataa 28085641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 4 - 42
Target Start/End: Original strand, 9706997 - 9707035
Alignment:
Q  4 tcatttgatccatgtagccgatcccacttaatgggataa 42  Q
    ||||||||||||||||||||| |||||||| ||||||||    
T  9706997 tcatttgatccatgtagccgaccccacttagtgggataa 9707035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 4 - 42
Target Start/End: Complemental strand, 34934885 - 34934847
Alignment:
Q  4 tcatttgatccatgtagccgatcccacttaatgggataa 42  Q
    ||||||||||||||||||||| |||||||| ||||||||    
T  34934885 tcatttgatccatgtagccgaccccacttagtgggataa 34934847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 6 - 43
Target Start/End: Original strand, 579647 - 579684
Alignment:
Q  6 atttgatccatgtagccgatcccacttaatgggataaa 43  Q
    |||||||| ||||||||||||||||||| |||||||||    
T  579647 atttgatctatgtagccgatcccacttagtgggataaa 579684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 608385 - 608426
Alignment:
Q  1 acgtcatttgatccatgtagccgatcccacttaatgggataa 42  Q
    |||||||||||||||||||||||| || ||||| ||||||||    
T  608385 acgtcatttgatccatgtagccgaccctacttagtgggataa 608426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 5897681 - 5897722
Alignment:
Q  1 acgtcatttgatccatgtagccgatcccacttaatgggataa 42  Q
    |||| |||||||||||||||| ||||||||||| ||||||||    
T  5897681 acgtaatttgatccatgtagcggatcccacttagtgggataa 5897722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 6 - 43
Target Start/End: Original strand, 32068649 - 32068686
Alignment:
Q  6 atttgatccatgtagccgatcccacttaatgggataaa 43  Q
    ||||||| |||||||||||||||||||| |||||||||    
T  32068649 atttgatacatgtagccgatcccacttagtgggataaa 32068686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 3 - 35
Target Start/End: Original strand, 413309 - 413341
Alignment:
Q  3 gtcatttgatccatgtagccgatcccacttaat 35  Q
    ||||||||||| |||||||||||||||||||||    
T  413309 gtcatttgatcaatgtagccgatcccacttaat 413341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 6 - 42
Target Start/End: Original strand, 5096063 - 5096099
Alignment:
Q  6 atttgatccatgtagccgatcccacttaatgggataa 42  Q
    |||||||| ||||||||||||||||||| ||||||||    
T  5096063 atttgatctatgtagccgatcccacttagtgggataa 5096099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 5258205 - 5258165
Alignment:
Q  2 cgtcatttgatccatgtagccgatcccacttaatgggataa 42  Q
    |||||||||||||| |||||||| |||||||| ||||||||    
T  5258205 cgtcatttgatccacgtagccgaccccacttagtgggataa 5258165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 6 - 42
Target Start/End: Original strand, 12890804 - 12890840
Alignment:
Q  6 atttgatccatgtagccgatcccacttaatgggataa 42  Q
    ||||||||||||||||||| |||||||| ||||||||    
T  12890804 atttgatccatgtagccgaccccacttagtgggataa 12890840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 6 - 42
Target Start/End: Complemental strand, 18130867 - 18130831
Alignment:
Q  6 atttgatccatgtagccgatcccacttaatgggataa 42  Q
    ||||||||||||||||||| ||||| |||||||||||    
T  18130867 atttgatccatgtagccgaccccacctaatgggataa 18130831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 34143822 - 34143782
Alignment:
Q  2 cgtcatttgatccatgtagccgatcccacttaatgggataa 42  Q
    ||||||||||||||||||| ||| |||||||| ||||||||    
T  34143822 cgtcatttgatccatgtagtcgaccccacttattgggataa 34143782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 34156438 - 34156398
Alignment:
Q  2 cgtcatttgatccatgtagccgatcccacttaatgggataa 42  Q
    ||||||||||||||||||| ||| |||||||| ||||||||    
T  34156438 cgtcatttgatccatgtagtcgaccccacttattgggataa 34156398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 4 - 43
Target Start/End: Original strand, 2393104 - 2393143
Alignment:
Q  4 tcatttgatccatgtagccgatcccacttaatgggataaa 43  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  2393104 tcatttgatccatgtagccgatcccacttaatgggataaa 2393143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 3 - 42
Target Start/End: Original strand, 39040982 - 39041021
Alignment:
Q  3 gtcatttgatccatgtagccgatcccacttaatgggataa 42  Q
    |||||||||||||||||||||| |||||||||||||||||    
T  39040982 gtcatttgatccatgtagccgaccccacttaatgggataa 39041021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 1275488 - 1275529
Alignment:
Q  1 acgtcatttgatccatgtagccgatcccacttaatgggataa 42  Q
    |||||||||||||||||||||||| |||||||| ||||||||    
T  1275488 acgtcatttgatccatgtagccgaccccacttagtgggataa 1275529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 408551 - 408511
Alignment:
Q  2 cgtcatttgatccatgtagccgatcccacttaatgggataa 42  Q
    ||||||||||||||||||||||| |||||||| ||||||||    
T  408551 cgtcatttgatccatgtagccgaccccacttagtgggataa 408511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 2915553 - 2915513
Alignment:
Q  2 cgtcatttgatccatgtagccgatcccacttaatgggataa 42  Q
    ||||||||||||||||||||||| |||||||| ||||||||    
T  2915553 cgtcatttgatccatgtagccgaccccacttagtgggataa 2915513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 3302069 - 3302109
Alignment:
Q  2 cgtcatttgatccatgtagccgatcccacttaatgggataa 42  Q
    ||||||||||||||||||||||| |||||||| ||||||||    
T  3302069 cgtcatttgatccatgtagccgaccccacttagtgggataa 3302109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 13561443 - 13561403
Alignment:
Q  2 cgtcatttgatccatgtagccgatcccacttaatgggataa 42  Q
    ||||||||||||||||||||||| |||||||| ||||||||    
T  13561443 cgtcatttgatccatgtagccgaccccacttagtgggataa 13561403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 14911397 - 14911437
Alignment:
Q  2 cgtcatttgatccatgtagccgatcccacttaatgggataa 42  Q
    ||||||||||||||||||||||| |||||||||||| ||||    
T  14911397 cgtcatttgatccatgtagccgaccccacttaatggaataa 14911437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 20456998 - 20457038
Alignment:
Q  2 cgtcatttgatccatgtagccgatcccacttaatgggataa 42  Q
    ||||||||||||||||||||||| |||||||| ||||||||    
T  20456998 cgtcatttgatccatgtagccgaccccacttagtgggataa 20457038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 29816607 - 29816647
Alignment:
Q  2 cgtcatttgatccatgtagccgatcccacttaatgggataa 42  Q
    ||||||||||||||||||||||| |||||||| ||||||||    
T  29816607 cgtcatttgatccatgtagccgaccccacttagtgggataa 29816647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 30213800 - 30213840
Alignment:
Q  2 cgtcatttgatccatgtagccgatcccacttaatgggataa 42  Q
    ||||||||||||||||||||||| |||||||| ||||||||    
T  30213800 cgtcatttgatccatgtagccgaccccacttagtgggataa 30213840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 38685192 - 38685232
Alignment:
Q  2 cgtcatttgatccatgtagccgatcccacttaatgggataa 42  Q
    ||||||||||||||||||||||| |||||||| ||||||||    
T  38685192 cgtcatttgatccatgtagccgaccccacttagtgggataa 38685232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 6 - 42
Target Start/End: Complemental strand, 39322132 - 39322096
Alignment:
Q  6 atttgatccatgtagccgatcccacttaatgggataa 42  Q
    |||||||||||||||||||||||||||| ||||||||    
T  39322132 atttgatccatgtagccgatcccacttagtgggataa 39322096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 4 - 42
Target Start/End: Original strand, 4496611 - 4496649
Alignment:
Q  4 tcatttgatccatgtagccgatcccacttaatgggataa 42  Q
    ||||||||||||||||||||| |||||||| ||||||||    
T  4496611 tcatttgatccatgtagccgaccccacttagtgggataa 4496649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 1287636 - 1287596
Alignment:
Q  2 cgtcatttgatccatgtagccgatcccacttaatgggataa 42  Q
    ||||| ||||||||||||||||| |||||||| ||||||||    
T  1287636 cgtcagttgatccatgtagccgaccccacttagtgggataa 1287596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 6 - 42
Target Start/End: Original strand, 5558370 - 5558406
Alignment:
Q  6 atttgatccatgtagccgatcccacttaatgggataa 42  Q
    ||||||||||||||||||| |||||||| ||||||||    
T  5558370 atttgatccatgtagccgaccccacttagtgggataa 5558406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 6 - 42
Target Start/End: Complemental strand, 7640560 - 7640524
Alignment:
Q  6 atttgatccatgtagccgatcccacttaatgggataa 42  Q
    |||||||||||||||||||||||||||| ||| ||||    
T  7640560 atttgatccatgtagccgatcccacttagtggaataa 7640524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 7 - 43
Target Start/End: Original strand, 7678707 - 7678743
Alignment:
Q  7 tttgatccatgtagccgatcccacttaatgggataaa 43  Q
    |||||||||||||||||| |||||||| |||||||||    
T  7678707 tttgatccatgtagccgaccccacttagtgggataaa 7678743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 10639527 - 10639567
Alignment:
Q  2 cgtcatttgatccatgtagccgatcccacttaatgggataa 42  Q
    ||||||||||||||||||||||| |||||||  ||||||||    
T  10639527 cgtcatttgatccatgtagccgaccccactttgtgggataa 10639567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 12492441 - 12492401
Alignment:
Q  2 cgtcatttgatccatgtagccgatcccacttaatgggataa 42  Q
    ||||||||||| ||||||||||| |||||||| ||||||||    
T  12492441 cgtcatttgatgcatgtagccgaccccacttagtgggataa 12492401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 16347437 - 16347397
Alignment:
Q  2 cgtcatttgatccatgtagccgatcccacttaatgggataa 42  Q
    ||||||||||||||||||||||| || ||||| ||||||||    
T  16347437 cgtcatttgatccatgtagccgaccctacttagtgggataa 16347397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 6 - 42
Target Start/End: Original strand, 18855836 - 18855872
Alignment:
Q  6 atttgatccatgtagccgatcccacttaatgggataa 42  Q
    ||||||||||||||||||| |||||||| ||||||||    
T  18855836 atttgatccatgtagccgaccccacttagtgggataa 18855872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 6 - 42
Target Start/End: Original strand, 27386569 - 27386605
Alignment:
Q  6 atttgatccatgtagccgatcccacttaatgggataa 42  Q
    ||||||||||||||||||| |||||||| ||||||||    
T  27386569 atttgatccatgtagccgaccccacttagtgggataa 27386605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 28976916 - 28976876
Alignment:
Q  2 cgtcatttgatccatgtagccgatcccacttaatgggataa 42  Q
    ||||||||||| ||||||||||| |||||||| ||||||||    
T  28976916 cgtcatttgattcatgtagccgaccccacttagtgggataa 28976876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 42272702 - 42272742
Alignment:
Q  2 cgtcatttgatccatgtagccgatcccacttaatgggataa 42  Q
    |||||||||||||||||||| || |||||||| ||||||||    
T  42272702 cgtcatttgatccatgtagctgaccccacttagtgggataa 42272742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 34)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 33073153 - 33073194
Alignment:
Q  1 acgtcatttgatccatgtagccgatcccacttaatgggataa 42  Q
    ||||||||||||||||||||||||||||||||| ||||||||    
T  33073153 acgtcatttgatccatgtagccgatcccacttagtgggataa 33073194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 6375093 - 6375133
Alignment:
Q  2 cgtcatttgatccatgtagccgatcccacttaatgggataa 42  Q
    ||||||||||||||||||||||| |||||||| ||||||||    
T  6375093 cgtcatttgatccatgtagccgaccccacttagtgggataa 6375133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 11594185 - 11594225
Alignment:
Q  2 cgtcatttgatccatgtagccgatcccacttaatgggataa 42  Q
    ||||||||||||||||||||||| |||||||| ||||||||    
T  11594185 cgtcatttgatccatgtagccgaccccacttagtgggataa 11594225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 12841332 - 12841292
Alignment:
Q  2 cgtcatttgatccatgtagccgatcccacttaatgggataa 42  Q
    ||||||||||||||||||||||| |||||||| ||||||||    
T  12841332 cgtcatttgatccatgtagccgaccccacttagtgggataa 12841292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 28208385 - 28208345
Alignment:
Q  2 cgtcatttgatccatgtagccgatcccacttaatgggataa 42  Q
    ||||||||||||||||||||||| |||||||| ||||||||    
T  28208385 cgtcatttgatccatgtagccgaccccacttagtgggataa 28208345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 29650609 - 29650649
Alignment:
Q  2 cgtcatttgatccatgtagccgatcccacttaatgggataa 42  Q
    ||||||||||||||||||||||| |||||||| ||||||||    
T  29650609 cgtcatttgatccatgtagccgaccccacttagtgggataa 29650649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 31682659 - 31682619
Alignment:
Q  2 cgtcatttgatccatgtagccgatcccacttaatgggataa 42  Q
    ||||||||||||||||||||||| |||||||| ||||||||    
T  31682659 cgtcatttgatccatgtagccgaccccacttagtgggataa 31682619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 31869159 - 31869119
Alignment:
Q  2 cgtcatttgatccatgtagccgatcccacttaatgggataa 42  Q
    ||||||||||||||||||||||| |||||||| ||||||||    
T  31869159 cgtcatttgatccatgtagccgaccccacttagtgggataa 31869119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 33349863 - 33349823
Alignment:
Q  2 cgtcatttgatccatgtagccgatcccacttaatgggataa 42  Q
    ||||||||||||||||||||||| | |||||||||||||||    
T  33349863 cgtcatttgatccatgtagccgacctcacttaatgggataa 33349823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 35906258 - 35906218
Alignment:
Q  2 cgtcatttgatccatgtagccgatcccacttaatgggataa 42  Q
    ||||||||||||||||||||||| |||||||| ||||||||    
T  35906258 cgtcatttgatccatgtagccgaccccacttagtgggataa 35906218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 36652217 - 36652257
Alignment:
Q  2 cgtcatttgatccatgtagccgatcccacttaatgggataa 42  Q
    ||||||||||||||||||||||| |||||||| ||||||||    
T  36652217 cgtcatttgatccatgtagccgaccccacttagtgggataa 36652257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 39906429 - 39906389
Alignment:
Q  2 cgtcatttgatccatgtagccgatcccacttaatgggataa 42  Q
    ||||||||||||||||||||||| |||||||| ||||||||    
T  39906429 cgtcatttgatccatgtagccgaccccacttagtgggataa 39906389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 45836539 - 45836499
Alignment:
Q  2 cgtcatttgatccatgtagccgatcccacttaatgggataa 42  Q
    ||||||||||||||||||||||| |||||||| ||||||||    
T  45836539 cgtcatttgatccatgtagccgaccccacttagtgggataa 45836499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 48919337 - 48919377
Alignment:
Q  2 cgtcatttgatccatgtagccgatcccacttaatgggataa 42  Q
    ||||||||||||||||||| ||| |||||||||||||||||    
T  48919337 cgtcatttgatccatgtagtcgaccccacttaatgggataa 48919377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 3 - 42
Target Start/End: Original strand, 31005431 - 31005470
Alignment:
Q  3 gtcatttgatccatgtagccgatcccacttaatgggataa 42  Q
    |||||||||||||||||||||| |||||||| ||||||||    
T  31005431 gtcatttgatccatgtagccgaccccacttagtgggataa 31005470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 3 - 42
Target Start/End: Original strand, 37618171 - 37618210
Alignment:
Q  3 gtcatttgatccatgtagccgatcccacttaatgggataa 42  Q
    |||||||||||||||||||||| |||||||| ||||||||    
T  37618171 gtcatttgatccatgtagccgaccccacttagtgggataa 37618210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 24777185 - 24777227
Alignment:
Q  1 acgtcatttgatccatgtagccgatcccacttaatgggataaa 43  Q
    |||||||||||| |||||||||||||| ||||| |||||||||    
T  24777185 acgtcatttgattcatgtagccgatcctacttagtgggataaa 24777227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 2 - 40
Target Start/End: Complemental strand, 34035211 - 34035173
Alignment:
Q  2 cgtcatttgatccatgtagccgatcccacttaatgggat 40  Q
    ||||||||||||||||||||||| |||||||| ||||||    
T  34035211 cgtcatttgatccatgtagccgaccccacttagtgggat 34035173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 7273324 - 7273365
Alignment:
Q  1 acgtcatttgatccatgtagccgatcccacttaatgggataa 42  Q
    |||| ||||||||||||||||||| |||||||| ||||||||    
T  7273324 acgtaatttgatccatgtagccgaccccacttagtgggataa 7273365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 42
Target Start/End: Complemental strand, 36869287 - 36869254
Alignment:
Q  9 tgatccatgtagccgatcccacttaatgggataa 42  Q
    |||||||||||||||| |||||||||||||||||    
T  36869287 tgatccatgtagccgaccccacttaatgggataa 36869254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 39
Target Start/End: Original strand, 40630659 - 40630696
Alignment:
Q  2 cgtcatttgatccatgtagccgatcccacttaatggga 39  Q
    ||||||||||||||||||||||| |||||||| |||||    
T  40630659 cgtcatttgatccatgtagccgaccccacttagtggga 40630696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 39
Target Start/End: Original strand, 43281899 - 43281936
Alignment:
Q  2 cgtcatttgatccatgtagccgatcccacttaatggga 39  Q
    ||||||||||||||||||||||| |||||||| |||||    
T  43281899 cgtcatttgatccatgtagccgaccccacttagtggga 43281936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 6 - 42
Target Start/End: Complemental strand, 2885775 - 2885739
Alignment:
Q  6 atttgatccatgtagccgatcccacttaatgggataa 42  Q
    ||||||||||||||||||| |||||||| ||||||||    
T  2885775 atttgatccatgtagccgaccccacttagtgggataa 2885739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 6 - 42
Target Start/End: Original strand, 6263488 - 6263524
Alignment:
Q  6 atttgatccatgtagccgatcccacttaatgggataa 42  Q
    ||||||||||||||||||| |||||||| ||||||||    
T  6263488 atttgatccatgtagccgaccccacttagtgggataa 6263524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 22349845 - 22349885
Alignment:
Q  2 cgtcatttgatccatgtagccgatcccacttaatgggataa 42  Q
    ||||||||||||||||||| ||| |||||||| ||||||||    
T  22349845 cgtcatttgatccatgtagtcgaccccacttagtgggataa 22349885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 6 - 42
Target Start/End: Original strand, 27649009 - 27649045
Alignment:
Q  6 atttgatccatgtagccgatcccacttaatgggataa 42  Q
    ||||||||||||||||||| |||||||| ||||||||    
T  27649009 atttgatccatgtagccgaccccacttagtgggataa 27649045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 6 - 42
Target Start/End: Original strand, 28708610 - 28708646
Alignment:
Q  6 atttgatccatgtagccgatcccacttaatgggataa 42  Q
    ||||||||||||||||||| |||||||| ||||||||    
T  28708610 atttgatccatgtagccgaccccacttagtgggataa 28708646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 32631789 - 32631829
Alignment:
Q  2 cgtcatttgatccatgtagccgatcccacttaatgggataa 42  Q
    |||||||||||| |||||||||| |||||||| ||||||||    
T  32631789 cgtcatttgatctatgtagccgaccccacttagtgggataa 32631829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 6 - 42
Target Start/End: Original strand, 33732061 - 33732097
Alignment:
Q  6 atttgatccatgtagccgatcccacttaatgggataa 42  Q
    |||||||||||||||||| ||||||||| ||||||||    
T  33732061 atttgatccatgtagccggtcccacttagtgggataa 33732097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 6 - 42
Target Start/End: Complemental strand, 34926575 - 34926539
Alignment:
Q  6 atttgatccatgtagccgatcccacttaatgggataa 42  Q
    ||||||||||||||||||||||||||||  |||||||    
T  34926575 atttgatccatgtagccgatcccacttagcgggataa 34926539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 38900182 - 38900221
Alignment:
Q  2 cgtcatttgatccatgtagccgatcccacttaatgggataa 42  Q
    ||||||||||||||||||||||| |||||||| ||||||||    
T  38900182 cgtcatttgatccatgtagccga-cccacttagtgggataa 38900221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 6 - 42
Target Start/End: Complemental strand, 40979981 - 40979945
Alignment:
Q  6 atttgatccatgtagccgatcccacttaatgggataa 42  Q
    ||||||||||||||||||| |||||||| ||||||||    
T  40979981 atttgatccatgtagccgaccccacttagtgggataa 40979945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 6 - 42
Target Start/End: Original strand, 42187670 - 42187706
Alignment:
Q  6 atttgatccatgtagccgatcccacttaatgggataa 42  Q
    ||||||||||||||||||| |||||||| ||||||||    
T  42187670 atttgatccatgtagccgaccccacttagtgggataa 42187706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 6 - 42
Target Start/End: Original strand, 42969927 - 42969963
Alignment:
Q  6 atttgatccatgtagccgatcccacttaatgggataa 42  Q
    ||||||||||||||||||| |||||||| ||||||||    
T  42969927 atttgatccatgtagccgaccccacttagtgggataa 42969963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 32)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 6957822 - 6957863
Alignment:
Q  1 acgtcatttgatccatgtagccgatcccacttaatgggataa 42  Q
    ||||||||||||||||||||||||||||||||| ||||||||    
T  6957822 acgtcatttgatccatgtagccgatcccacttagtgggataa 6957863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 27983417 - 27983458
Alignment:
Q  1 acgtcatttgatccatgtagccgatcccacttaatgggataa 42  Q
    ||||||||||||||||||||||||||||| ||||||||||||    
T  27983417 acgtcatttgatccatgtagccgatcccaattaatgggataa 27983458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 1777074 - 1777034
Alignment:
Q  2 cgtcatttgatccatgtagccgatcccacttaatgggataa 42  Q
    ||||||||||||||||||||||| |||||||||||||||||    
T  1777074 cgtcatttgatccatgtagccgaccccacttaatgggataa 1777034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 4441078 - 4441118
Alignment:
Q  2 cgtcatttgatccatgtagccgatcccacttaatgggataa 42  Q
    ||||||||||||||||||||||| |||||||| ||||||||    
T  4441078 cgtcatttgatccatgtagccgaccccacttagtgggataa 4441118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 19969406 - 19969446
Alignment:
Q  2 cgtcatttgatccatgtagccgatcccacttaatgggataa 42  Q
    ||||||||||||||||||||||| |||||||| ||||||||    
T  19969406 cgtcatttgatccatgtagccgaccccacttagtgggataa 19969446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 27450237 - 27450197
Alignment:
Q  2 cgtcatttgatccatgtagccgatcccacttaatgggataa 42  Q
    ||||||||||||||||||||||| |||||||| ||||||||    
T  27450237 cgtcatttgatccatgtagccgaccccacttagtgggataa 27450197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 31959871 - 31959831
Alignment:
Q  2 cgtcatttgatccatgtagccgatcccacttaatgggataa 42  Q
    ||||||||||||||||||||||| |||||||| ||||||||    
T  31959871 cgtcatttgatccatgtagccgaccccacttagtgggataa 31959831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 49939791 - 49939751
Alignment:
Q  2 cgtcatttgatccatgtagccgatcccacttaatgggataa 42  Q
    ||||||||||||||||||||||| |||||||| ||||||||    
T  49939791 cgtcatttgatccatgtagccgaccccacttagtgggataa 49939751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 50238672 - 50238632
Alignment:
Q  2 cgtcatttgatccatgtagccgatcccacttaatgggataa 42  Q
    ||||||||||||||||||||||| |||||||| ||||||||    
T  50238672 cgtcatttgatccatgtagccgaccccacttagtgggataa 50238632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 50238758 - 50238718
Alignment:
Q  2 cgtcatttgatccatgtagccgatcccacttaatgggataa 42  Q
    ||||||||||||||||||||||| |||||||| ||||||||    
T  50238758 cgtcatttgatccatgtagccgaccccacttagtgggataa 50238718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 52569572 - 52569532
Alignment:
Q  2 cgtcatttgatccatgtagccgatcccacttaatgggataa 42  Q
    ||||||||||||||||||||||| |||||||| ||||||||    
T  52569572 cgtcatttgatccatgtagccgaccccacttagtgggataa 52569532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 7 - 42
Target Start/End: Complemental strand, 8598948 - 8598913
Alignment:
Q  7 tttgatccatgtagccgatcccacttaatgggataa 42  Q
    |||||| |||||||||||||||||||||||||||||    
T  8598948 tttgattcatgtagccgatcccacttaatgggataa 8598913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 4 - 42
Target Start/End: Original strand, 436456 - 436494
Alignment:
Q  4 tcatttgatccatgtagccgatcccacttaatgggataa 42  Q
    ||||||||||||||||||||| |||||||| ||||||||    
T  436456 tcatttgatccatgtagccgaccccacttagtgggataa 436494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 8286663 - 8286704
Alignment:
Q  1 acgtcatttgatccatgtagccgatcccacttaatgggataa 42  Q
    |||||||||||||||||||||||  |||||||| ||||||||    
T  8286663 acgtcatttgatccatgtagccgcccccacttagtgggataa 8286704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 5 - 42
Target Start/End: Original strand, 21528516 - 21528553
Alignment:
Q  5 catttgatccatgtagccgatcccacttaatgggataa 42  Q
    |||||||||||||||||||| |||||||| ||||||||    
T  21528516 catttgatccatgtagccgaccccacttagtgggataa 21528553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 33227433 - 33227462
Alignment:
Q  1 acgtcatttgatccatgtagccgatcccac 30  Q
    ||||||||||||||||||||||||||||||    
T  33227433 acgtcatttgatccatgtagccgatcccac 33227462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 51811336 - 51811296
Alignment:
Q  1 acgtcatttgatccatgtagccgatcccacttaatgggataa 42  Q
    |||||||||||||||||||||||| |||||||| ||||||||    
T  51811336 acgtcatttgatccatgtagccga-cccacttagtgggataa 51811296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 55007970 - 55008011
Alignment:
Q  1 acgtcatttgatccatgtagccgatcccacttaatgggataa 42  Q
    |||| ||||||||||||||||||| |||||||| ||||||||    
T  55007970 acgtaatttgatccatgtagccgaccccacttagtgggataa 55008011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 56375514 - 56375555
Alignment:
Q  1 acgtcatttgatccatgtagccgatcccacttaatgggataa 42  Q
    |||||||||||||||||||||||| | |||||| ||||||||    
T  56375514 acgtcatttgatccatgtagccgacctcacttagtgggataa 56375555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 6 - 42
Target Start/End: Complemental strand, 1211445 - 1211409
Alignment:
Q  6 atttgatccatgtagccgatcccacttaatgggataa 42  Q
    ||||||| ||||||||||| |||||||||||||||||    
T  1211445 atttgattcatgtagccgaccccacttaatgggataa 1211409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 6 - 42
Target Start/End: Complemental strand, 7544584 - 7544548
Alignment:
Q  6 atttgatccatgtagccgatcccacttaatgggataa 42  Q
    ||||||||||||||||||| |||||||| ||||||||    
T  7544584 atttgatccatgtagccgaccccacttagtgggataa 7544548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 6 - 42
Target Start/End: Original strand, 7947166 - 7947202
Alignment:
Q  6 atttgatccatgtagccgatcccacttaatgggataa 42  Q
    ||||||||||||||||||| |||||||| ||||||||    
T  7947166 atttgatccatgtagccgaccccacttagtgggataa 7947202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 6 - 42
Target Start/End: Complemental strand, 15661925 - 15661889
Alignment:
Q  6 atttgatccatgtagccgatcccacttaatgggataa 42  Q
    ||||||||||||||||||| |||||||| ||||||||    
T  15661925 atttgatccatgtagccgaccccacttagtgggataa 15661889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 19061992 - 19061952
Alignment:
Q  2 cgtcatttgatccatgtagccgatcccacttaatgggataa 42  Q
    ||||||||||||||||||||||| ||||| || ||||||||    
T  19061992 cgtcatttgatccatgtagccgaccccacctagtgggataa 19061952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 23906354 - 23906314
Alignment:
Q  2 cgtcatttgatccatgtagccgatcccacttaatgggataa 42  Q
    |||||||||||||||||||| || |||||||| ||||||||    
T  23906354 cgtcatttgatccatgtagctgaccccacttagtgggataa 23906314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 6 - 42
Target Start/End: Complemental strand, 30634159 - 30634123
Alignment:
Q  6 atttgatccatgtagccgatcccacttaatgggataa 42  Q
    ||||||||||||||||||| |||||||| ||||||||    
T  30634159 atttgatccatgtagccgaccccacttagtgggataa 30634123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 32613654 - 32613694
Alignment:
Q  1 acgtcatttgatccatgtagccgatcccacttaatgggata 41  Q
    ||||| |||||||||||||||| ||| ||||||||||||||    
T  32613654 acgtcgtttgatccatgtagccaatcacacttaatgggata 32613694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 6 - 42
Target Start/End: Original strand, 35690500 - 35690536
Alignment:
Q  6 atttgatccatgtagccgatcccacttaatgggataa 42  Q
    ||||||||||||||||||| |||||||| ||||||||    
T  35690500 atttgatccatgtagccgaccccacttagtgggataa 35690536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 43434149 - 43434189
Alignment:
Q  2 cgtcatttgatccatgtagccgatcccacttaatgggataa 42  Q
    ||||||||||||||||||| ||| |||||||| ||||||||    
T  43434149 cgtcatttgatccatgtagtcgagcccacttagtgggataa 43434189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 48174150 - 48174110
Alignment:
Q  2 cgtcatttgatccatgtagccgatcccacttaatgggataa 42  Q
    |||||||||||||||||||| || |||||||| ||||||||    
T  48174150 cgtcatttgatccatgtagcagaccccacttagtgggataa 48174110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 48622600 - 48622560
Alignment:
Q  2 cgtcatttgatccatgtagccgatcccacttaatgggataa 42  Q
    |||||||| |||||||||||||| |||||||| ||||||||    
T  48622600 cgtcatttaatccatgtagccgaccccacttagtgggataa 48622560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 6 - 42
Target Start/End: Original strand, 50862860 - 50862896
Alignment:
Q  6 atttgatccatgtagccgatcccacttaatgggataa 42  Q
    ||||||||||||||||||| |||||||| ||||||||    
T  50862860 atttgatccatgtagccgaccccacttagtgggataa 50862896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 7895937 - 7895897
Alignment:
Q  2 cgtcatttgatccatgtagccgatcccacttaatgggataa 42  Q
    ||||||||||||||||||||||| |||||||||||||||||    
T  7895937 cgtcatttgatccatgtagccgaccccacttaatgggataa 7895897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 7278688 - 7278730
Alignment:
Q  1 acgtcatttgatccatgtagccgatcccacttaatgggataaa 43  Q
    |||||||||||||||||||||||| |||||||| |||||||||    
T  7278688 acgtcatttgatccatgtagccgaccccacttagtgggataaa 7278730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 28245661 - 28245702
Alignment:
Q  1 acgtcatttgatccatgtagccgatcccacttaatgggataa 42  Q
    ||||||||||||||||||||||||||||||||| || |||||    
T  28245661 acgtcatttgatccatgtagccgatcccacttagtgagataa 28245702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 5169057 - 5169097
Alignment:
Q  2 cgtcatttgatccatgtagccgatcccacttaatgggataa 42  Q
    ||||||||||||||||||||||| |||||||| ||||||||    
T  5169057 cgtcatttgatccatgtagccgaccccacttagtgggataa 5169097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 12096762 - 12096722
Alignment:
Q  2 cgtcatttgatccatgtagccgatcccacttaatgggataa 42  Q
    ||||||||||||||||||||||| |||||||| ||||||||    
T  12096762 cgtcatttgatccatgtagccgaccccacttagtgggataa 12096722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 25191602 - 25191642
Alignment:
Q  2 cgtcatttgatccatgtagccgatcccacttaatgggataa 42  Q
    |||||||||||||||||||| ||||||||||| ||||||||    
T  25191602 cgtcatttgatccatgtagctgatcccacttagtgggataa 25191642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 341 - 373
Target Start/End: Original strand, 41816081 - 41816113
Alignment:
Q  341 taggttgctttctctccctattttgtttaacac 373  Q
    |||||||||||||||||||||||||||||||||    
T  41816081 taggttgctttctctccctattttgtttaacac 41816113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 3 - 42
Target Start/End: Complemental strand, 31566217 - 31566178
Alignment:
Q  3 gtcatttgatccatgtagccgatcccacttaatgggataa 42  Q
    |||||||||||||||||||||| |||||||| ||||||||    
T  31566217 gtcatttgatccatgtagccgaccccacttagtgggataa 31566178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 43
Target Start/End: Original strand, 22297 - 22338
Alignment:
Q  2 cgtcatttgatccatgtagccgatcccacttaatgggataaa 43  Q
    |||||||||||| |||||||||| |||||||| |||||||||    
T  22297 cgtcatttgatctatgtagccgaccccacttagtgggataaa 22338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 39
Target Start/End: Complemental strand, 40273262 - 40273225
Alignment:
Q  2 cgtcatttgatccatgtagccgatcccacttaatggga 39  Q
    ||||||||||||||||||||||| |||||||| |||||    
T  40273262 cgtcatttgatccatgtagccgaccccacttagtggga 40273225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 52139024 - 52139065
Alignment:
Q  1 acgtcatttgatccatgtagccgatcccacttaatgggataa 42  Q
    |||| ||||||||||||||||||| |||||||| ||||||||    
T  52139024 acgttatttgatccatgtagccgaccccacttagtgggataa 52139065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 53519804 - 53519845
Alignment:
Q  1 acgtcatttgatccatgtagccgatcccacttaatgggataa 42  Q
    |||||||||||||||||||||||| |||||||| || |||||    
T  53519804 acgtcatttgatccatgtagccgaccccacttagtgagataa 53519845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 35
Target Start/End: Original strand, 54279245 - 54279278
Alignment:
Q  2 cgtcatttgatccatgtagccgatcccacttaat 35  Q
    |||||||||||| |||||||||||||||||||||    
T  54279245 cgtcatttgatcaatgtagccgatcccacttaat 54279278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 311366 - 311326
Alignment:
Q  2 cgtcatttgatccatgtagccgatcccacttaatgggataa 42  Q
    ||||||||||| ||||||||||| |||||||| ||||||||    
T  311366 cgtcatttgatacatgtagccgaccccacttagtgggataa 311326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 6 - 42
Target Start/End: Complemental strand, 24778662 - 24778626
Alignment:
Q  6 atttgatccatgtagccgatcccacttaatgggataa 42  Q
    ||||||||||||||||||| |||||||| ||||||||    
T  24778662 atttgatccatgtagccgaccccacttagtgggataa 24778626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 6 - 42
Target Start/End: Original strand, 38060943 - 38060979
Alignment:
Q  6 atttgatccatgtagccgatcccacttaatgggataa 42  Q
    ||||||||||||||||||| |||||||| ||||||||    
T  38060943 atttgatccatgtagccgaccccacttagtgggataa 38060979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 6 - 42
Target Start/End: Original strand, 41529990 - 41530026
Alignment:
Q  6 atttgatccatgtagccgatcccacttaatgggataa 42  Q
    ||||||||||||||||||| |||||||| ||||||||    
T  41529990 atttgatccatgtagccgaccccacttagtgggataa 41530026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 45834657 - 45834617
Alignment:
Q  2 cgtcatttgatccatgtagccgatcccacttaatgggataa 42  Q
    ||||||||||||||||||||| | |||||||| ||||||||    
T  45834657 cgtcatttgatccatgtagccaaccccacttagtgggataa 45834617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 47555389 - 47555349
Alignment:
Q  2 cgtcatttgatccatgtagccgatcccacttaatgggataa 42  Q
    ||||||||||||||||||||| | |||||||| ||||||||    
T  47555389 cgtcatttgatccatgtagccaaccccacttagtgggataa 47555349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 6 - 42
Target Start/End: Original strand, 48508464 - 48508500
Alignment:
Q  6 atttgatccatgtagccgatcccacttaatgggataa 42  Q
    ||||||||||||||||||| |||||||| ||||||||    
T  48508464 atttgatccatgtagccgaccccacttagtgggataa 48508500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 52156141 - 52156101
Alignment:
Q  2 cgtcatttgatccatgtagccgatcccacttaatgggataa 42  Q
    |||||| |||||||||||||||| |||||||| ||||||||    
T  52156141 cgtcatctgatccatgtagccgaccccacttagtgggataa 52156101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 6 - 42
Target Start/End: Complemental strand, 52927901 - 52927865
Alignment:
Q  6 atttgatccatgtagccgatcccacttaatgggataa 42  Q
    ||||||||||||||||||| |||||||| ||||||||    
T  52927901 atttgatccatgtagccgaccccacttagtgggataa 52927865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 53262366 - 53262406
Alignment:
Q  2 cgtcatttgatccatgtagccgatcccacttaatgggataa 42  Q
    |||||||||||| |||||||||| |||||||| ||||||||    
T  53262366 cgtcatttgatctatgtagccgaccccacttagtgggataa 53262406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 36)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 9592959 - 9592999
Alignment:
Q  2 cgtcatttgatccatgtagccgatcccacttaatgggataa 42  Q
    ||||||||||||||||||||||| |||||||||||||||||    
T  9592959 cgtcatttgatccatgtagccgaccccacttaatgggataa 9592999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 34792406 - 34792366
Alignment:
Q  2 cgtcatttgatccatgtagccgatcccacttaatgggataa 42  Q
    ||||||||||||||||||||||| |||||||||||||||||    
T  34792406 cgtcatttgatccatgtagccgaccccacttaatgggataa 34792366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 3777318 - 3777277
Alignment:
Q  1 acgtcatttgatccatgtagccgatcccacttaatgggataa 42  Q
    ||||||||||||||||||||||||||||||||| | ||||||    
T  3777318 acgtcatttgatccatgtagccgatcccacttagtaggataa 3777277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 28533691 - 28533732
Alignment:
Q  1 acgtcatttgatccatgtagccgatcccacttaatgggataa 42  Q
    |||||||||||||||||||||||| |||||||| ||||||||    
T  28533691 acgtcatttgatccatgtagccgaccccacttagtgggataa 28533732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 1210970 - 1211010
Alignment:
Q  2 cgtcatttgatccatgtagccgatcccacttaatgggataa 42  Q
    ||||||||||||||||||||||| |||||||| ||||||||    
T  1210970 cgtcatttgatccatgtagccgaccccacttagtgggataa 1211010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 6025830 - 6025870
Alignment:
Q  2 cgtcatttgatccatgtagccgatcccacttaatgggataa 42  Q
    |||||||||||||||||||||||| ||||||| ||||||||    
T  6025830 cgtcatttgatccatgtagccgattccacttagtgggataa 6025870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 25979288 - 25979248
Alignment:
Q  2 cgtcatttgatccatgtagccgatcccacttaatgggataa 42  Q
    ||||||||||||||||||||||| |||||||| ||||||||    
T  25979288 cgtcatttgatccatgtagccgaccccacttagtgggataa 25979248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 29577477 - 29577517
Alignment:
Q  2 cgtcatttgatccatgtagccgatcccacttaatgggataa 42  Q
    ||||||||||||||||||||||| |||||||| ||||||||    
T  29577477 cgtcatttgatccatgtagccgaccccacttagtgggataa 29577517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 30202187 - 30202147
Alignment:
Q  2 cgtcatttgatccatgtagccgatcccacttaatgggataa 42  Q
    ||||||||||||||||||||||| |||||||| ||||||||    
T  30202187 cgtcatttgatccatgtagccgaccccacttagtgggataa 30202147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 38877400 - 38877360
Alignment:
Q  2 cgtcatttgatccatgtagccgatcccacttaatgggataa 42  Q
    ||||||||||||||||||||||| |||||||| ||||||||    
T  38877400 cgtcatttgatccatgtagccgaacccacttagtgggataa 38877360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 46423273 - 46423233
Alignment:
Q  2 cgtcatttgatccatgtagccgatcccacttaatgggataa 42  Q
    ||||||||||||||||||||||| |||||||| ||||||||    
T  46423273 cgtcatttgatccatgtagccgaccccacttagtgggataa 46423233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 49347450 - 49347410
Alignment:
Q  2 cgtcatttgatccatgtagccgatcccacttaatgggataa 42  Q
    ||||||||||||||||||||||| |||||||| ||||||||    
T  49347450 cgtcatttgatccatgtagccgaccccacttagtgggataa 49347410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 52921305 - 52921345
Alignment:
Q  2 cgtcatttgatccatgtagccgatcccacttaatgggataa 42  Q
    ||||||||||||||||||||||| |||||||| ||||||||    
T  52921305 cgtcatttgatccatgtagccgaccccacttagtgggataa 52921345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 5 - 42
Target Start/End: Original strand, 4029350 - 4029387
Alignment:
Q  5 catttgatccatgtagccgatcccacttaatgggataa 42  Q
    |||||||||||||||||||| |||||||| ||||||||    
T  4029350 catttgatccatgtagccgaccccacttagtgggataa 4029387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 39
Target Start/End: Complemental strand, 4318902 - 4318865
Alignment:
Q  2 cgtcatttgatccatgtagccgatcccacttaatggga 39  Q
    ||||||||||||||||||||||| |||||||| |||||    
T  4318902 cgtcatttgatccatgtagccgaccccacttagtggga 4318865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 15086146 - 15086187
Alignment:
Q  1 acgtcatttgatccatgtagccgatcccacttaatgggataa 42  Q
    |||||||||||||||||||||| | |||||||| ||||||||    
T  15086146 acgtcatttgatccatgtagccaaccccacttagtgggataa 15086187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 22090320 - 22090361
Alignment:
Q  1 acgtcatttgatccatgtagccgatcccacttaatgggataa 42  Q
    |||||||||||||||||||||||| |||||| | ||||||||    
T  22090320 acgtcatttgatccatgtagccgaccccactaagtgggataa 22090361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 39
Target Start/End: Complemental strand, 37311812 - 37311775
Alignment:
Q  2 cgtcatttgatccatgtagccgatcccacttaatggga 39  Q
    ||||||||||||||||||||||| |||||||| |||||    
T  37311812 cgtcatttgatccatgtagccgaccccacttagtggga 37311775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 39
Target Start/End: Original strand, 41165507 - 41165544
Alignment:
Q  2 cgtcatttgatccatgtagccgatcccacttaatggga 39  Q
    ||||||||||||||||||||||| |||||||| |||||    
T  41165507 cgtcatttgatccatgtagccgaccccacttagtggga 41165544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 6 - 43
Target Start/End: Complemental strand, 43375651 - 43375614
Alignment:
Q  6 atttgatccatgtagccgatcccacttaatgggataaa 43  Q
    ||||||||||||||||| |||||||||| |||||||||    
T  43375651 atttgatccatgtagccaatcccacttagtgggataaa 43375614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 696495 - 696535
Alignment:
Q  2 cgtcatttgatccatgtagccgatcccacttaatgggataa 42  Q
    |||||||||||| |||||||||| |||||||| ||||||||    
T  696495 cgtcatttgatcaatgtagccgaccccacttagtgggataa 696535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 6 - 42
Target Start/End: Complemental strand, 4590585 - 4590549
Alignment:
Q  6 atttgatccatgtagccgatcccacttaatgggataa 42  Q
    ||||||||||||||||||| |||||||| ||||||||    
T  4590585 atttgatccatgtagccgaccccacttagtgggataa 4590549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 6 - 42
Target Start/End: Complemental strand, 10200359 - 10200323
Alignment:
Q  6 atttgatccatgtagccgatcccacttaatgggataa 42  Q
    ||||||||||||||||||| | |||||||||||||||    
T  10200359 atttgatccatgtagccgacctcacttaatgggataa 10200323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 6 - 42
Target Start/End: Original strand, 22175374 - 22175410
Alignment:
Q  6 atttgatccatgtagccgatcccacttaatgggataa 42  Q
    ||||||||||||||||||| |||||||| ||||||||    
T  22175374 atttgatccatgtagccgaccccacttagtgggataa 22175410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 6 - 42
Target Start/End: Original strand, 26299297 - 26299333
Alignment:
Q  6 atttgatccatgtagccgatcccacttaatgggataa 42  Q
    ||||||||||||||||||| |||||||| ||||||||    
T  26299297 atttgatccatgtagccgaccccacttagtgggataa 26299333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 6 - 42
Target Start/End: Complemental strand, 28090747 - 28090711
Alignment:
Q  6 atttgatccatgtagccgatcccacttaatgggataa 42  Q
    ||||||||||||||||||| |||||||| ||||||||    
T  28090747 atttgatccatgtagccgaccccacttagtgggataa 28090711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 3 - 39
Target Start/End: Complemental strand, 32082812 - 32082776
Alignment:
Q  3 gtcatttgatccatgtagccgatcccacttaatggga 39  Q
    |||||||||||||||||||||| |||||||| |||||    
T  32082812 gtcatttgatccatgtagccgaccccacttagtggga 32082776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 6 - 42
Target Start/End: Complemental strand, 32404579 - 32404543
Alignment:
Q  6 atttgatccatgtagccgatcccacttaatgggataa 42  Q
    ||||||||||||||||||| |||||||| ||||||||    
T  32404579 atttgatccatgtagccgaccccacttagtgggataa 32404543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 6 - 42
Target Start/End: Complemental strand, 37429952 - 37429916
Alignment:
Q  6 atttgatccatgtagccgatcccacttaatgggataa 42  Q
    ||||||||||||||||||| |||| ||||||||||||    
T  37429952 atttgatccatgtagccgaccccatttaatgggataa 37429916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 6 - 42
Target Start/End: Complemental strand, 37462929 - 37462893
Alignment:
Q  6 atttgatccatgtagccgatcccacttaatgggataa 42  Q
    ||||||||||||||||||| |||||||| ||||||||    
T  37462929 atttgatccatgtagccgaccccacttagtgggataa 37462893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 6 - 42
Target Start/End: Original strand, 41560458 - 41560494
Alignment:
Q  6 atttgatccatgtagccgatcccacttaatgggataa 42  Q
    ||||||||||||||||||| |||||||| ||||||||    
T  41560458 atttgatccatgtagccgaccccacttagtgggataa 41560494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 6 - 42
Target Start/End: Complemental strand, 43481851 - 43481815
Alignment:
Q  6 atttgatccatgtagccgatcccacttaatgggataa 42  Q
    ||||||||||||||||||| |||||||| ||||||||    
T  43481851 atttgatccatgtagccgaccccacttagtgggataa 43481815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 44751709 - 44751749
Alignment:
Q  2 cgtcatttgatccatgtagccgatcccacttaatgggataa 42  Q
    ||||||||||||||||||||||| | |||||| ||||||||    
T  44751709 cgtcatttgatccatgtagccgacctcacttagtgggataa 44751749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 6 - 42
Target Start/End: Complemental strand, 44941829 - 44941793
Alignment:
Q  6 atttgatccatgtagccgatcccacttaatgggataa 42  Q
    ||||||||||||||||||| |||||||| ||||||||    
T  44941829 atttgatccatgtagccgaccccacttagtgggataa 44941793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 51602281 - 51602321
Alignment:
Q  2 cgtcatttgatccatgtagccgatcccacttaatgggataa 42  Q
    ||||||||||||||||||||| | |||||||| ||||||||    
T  51602281 cgtcatttgatccatgtagccaaccccacttagtgggataa 51602321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 6 - 42
Target Start/End: Complemental strand, 52561642 - 52561606
Alignment:
Q  6 atttgatccatgtagccgatcccacttaatgggataa 42  Q
    ||||||||||||||||||| |||||||| ||||||||    
T  52561642 atttgatccatgtagccgaccccacttagtgggataa 52561606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 82942 - 82983
Alignment:
Q  1 acgtcatttgatccatgtagccgatcccacttaatgggataa 42  Q
    |||||||||||||||||||||||| |||||||||||| ||||    
T  82942 acgtcatttgatccatgtagccgaccccacttaatggaataa 82983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 36545373 - 36545414
Alignment:
Q  1 acgtcatttgatccatgtagccgatcccacttaatgggataa 42  Q
    |||||||||||||||||||||||| |||||||| ||||||||    
T  36545373 acgtcatttgatccatgtagccgaccccacttagtgggataa 36545414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 11523780 - 11523740
Alignment:
Q  2 cgtcatttgatccatgtagccgatcccacttaatgggataa 42  Q
    ||||||||||||||||||||||| |||||||| ||||||||    
T  11523780 cgtcatttgatccatgtagccgaccccacttagtgggataa 11523740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 12491195 - 12491155
Alignment:
Q  2 cgtcatttgatccatgtagccgatcccacttaatgggataa 42  Q
    ||||||||||||||||||||||| |||||||| ||||||||    
T  12491195 cgtcatttgatccatgtagccgaccccacttagtgggataa 12491155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 14742139 - 14742099
Alignment:
Q  2 cgtcatttgatccatgtagccgatcccacttaatgggataa 42  Q
    ||||||||||||||||||||||| |||||||| ||||||||    
T  14742139 cgtcatttgatccatgtagccgaccccacttagtgggataa 14742099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 25473460 - 25473420
Alignment:
Q  2 cgtcatttgatccatgtagccgatcccacttaatgggataa 42  Q
    ||||||||||||||||||||||| |||||||| ||||||||    
T  25473460 cgtcatttgatccatgtagccgaccccacttagtgggataa 25473420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 7 - 42
Target Start/End: Original strand, 26055651 - 26055686
Alignment:
Q  7 tttgatccatgtagccgatcccacttaatgggataa 42  Q
    ||||||||||||||||||||||||||| ||||||||    
T  26055651 tttgatccatgtagccgatcccacttagtgggataa 26055686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 37077973 - 37078015
Alignment:
Q  1 acgtcatttgatccatgtagccgatcccacttaatgggataaa 43  Q
    |||| |||||||||||| |||||| ||||||||||||||||||    
T  37077973 acgtaatttgatccatgcagccgaccccacttaatgggataaa 37078015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 4 - 42
Target Start/End: Original strand, 44529452 - 44529490
Alignment:
Q  4 tcatttgatccatgtagccgatcccacttaatgggataa 42  Q
    ||||||||||||||||||||| |||||||| ||||||||    
T  44529452 tcatttgatccatgtagccgaccccacttagtgggataa 44529490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 30689959 - 30690000
Alignment:
Q  1 acgtcatttgatccatgtagccgatcccacttaatgggataa 42  Q
    |||| ||||||||||||||||||| |||||||| ||||||||    
T  30689959 acgtaatttgatccatgtagccgaccccacttagtgggataa 30690000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 6 - 42
Target Start/End: Original strand, 490564 - 490600
Alignment:
Q  6 atttgatccatgtagccgatcccacttaatgggataa 42  Q
    ||||||||||||||||||| |||||||| ||||||||    
T  490564 atttgatccatgtagccgaccccacttagtgggataa 490600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 6 - 42
Target Start/End: Complemental strand, 1928640 - 1928604
Alignment:
Q  6 atttgatccatgtagccgatcccacttaatgggataa 42  Q
    ||||||||||||||||||| |||||||| ||||||||    
T  1928640 atttgatccatgtagccgaccccacttagtgggataa 1928604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 6 - 42
Target Start/End: Complemental strand, 36565294 - 36565258
Alignment:
Q  6 atttgatccatgtagccgatcccacttaatgggataa 42  Q
    ||||||||||||||||||| |||||||| ||||||||    
T  36565294 atttgatccatgtagccgaccccacttagtgggataa 36565258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 42469784 - 42469744
Alignment:
Q  2 cgtcatttgatccatgtagccgatcccacttaatgggataa 42  Q
    |||||||||||||||||||| || |||||||| ||||||||    
T  42469784 cgtcatttgatccatgtagctgaccccacttattgggataa 42469744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 42854061 - 42854021
Alignment:
Q  2 cgtcatttgatccatgtagccgatcccacttaatgggataa 42  Q
    ||||||||||||||||||||||| |||| ||| ||||||||    
T  42854061 cgtcatttgatccatgtagccgaccccatttagtgggataa 42854021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 44047589 - 44047549
Alignment:
Q  2 cgtcatttgatccatgtagccgatcccacttaatgggataa 42  Q
    |||||||||||||||||||| || |||||||| ||||||||    
T  44047589 cgtcatttgatccatgtagctgaccccacttagtgggataa 44047549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 6 - 42
Target Start/End: Original strand, 45419464 - 45419500
Alignment:
Q  6 atttgatccatgtagccgatcccacttaatgggataa 42  Q
    ||||||||||||||||||| |||||||| ||||||||    
T  45419464 atttgatccatgtagccgaccccacttagtgggataa 45419500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1318 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold1318
Description:

Target: scaffold1318; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 556 - 596
Alignment:
Q  2 cgtcatttgatccatgtagccgatcccacttaatgggataa 42  Q
    ||||||||||||||||||||||| |||||||| ||||||||    
T  556 cgtcatttgatccatgtagccgaccccacttagtgggataa 596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 28946 - 28906
Alignment:
Q  2 cgtcatttgatccatgtagccgatcccacttaatgggataa 42  Q
    ||||||||||||||||||||||| |||||||| ||||||||    
T  28946 cgtcatttgatccatgtagccgaccccacttagtgggataa 28906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 3 - 42
Target Start/End: Original strand, 31694 - 31733
Alignment:
Q  3 gtcatttgatccatgtagccgatcccacttaatgggataa 42  Q
    |||||||||||||||||||||| |||||||| ||||||||    
T  31694 gtcatttgatccatgtagccgaccccacttagtgggataa 31733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0113 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0113
Description:

Target: scaffold0113; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 11607 - 11566
Alignment:
Q  1 acgtcatttgatccatgtagccgatcccacttaatgggataa 42  Q
    |||||||||||||||||||||||| |||||||| | ||||||    
T  11607 acgtcatttgatccatgtagccgaccccacttagtaggataa 11566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University