View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19193_high_2 (Length: 638)
Name: NF19193_high_2
Description: NF19193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19193_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 579; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 579; E-Value: 0
Query Start/End: Original strand, 1 - 623
Target Start/End: Complemental strand, 8975318 - 8974699
Alignment:
| Q |
1 |
atagtgcaaggggttataagagcctctataacactttgttgtcagactcgaagtggacctgctcccttacccaacgcttgaagtggaatatctctaataa |
100 |
Q |
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| T |
8975318 |
atagtgaaagggtttataagagcctccataacactttgttgtcagactcgaagtggacctgctcccttacccaacgcttgaagtggaatatctctaataa |
8975219 |
T |
|
| Q |
101 |
aatctgcatcactgggattgaagaggcttctcacaagattattgcgccaagtcttcaaaatcgggtcaaaaagatgagagaccataagatgctccatttt |
200 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8975218 |
aatctgcatcactggggttgaagaggcttctcacaagattattgcgccaagtcttcaaaatcgggtcaaaaagatgagagaccataagatgctccatttt |
8975119 |
T |
|
| Q |
201 |
aaaggtacggaagaggatggcgaaagttgaggcttagtgtggatccagggagggatcccacaaaaggagtatttggtaaaaaattaaacatttattttgt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8975118 |
aaaggtacggaagaggatggcgaaagttgaggcttagtgtggatccagggagggatcccacaaaaggagtatttggtaaaaaattaaacatttattttgt |
8975019 |
T |
|
| Q |
301 |
cctacggaaacttcttcgtgtctgtctaaacggcgattgcttatttatttagcaacaaatgataagaaagtagcatattttctt-aaaaaatttactaaa |
399 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |
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| T |
8975018 |
cctacggaaacttcttcgtgtctgtctaaacggcgattgcttatttatttagcaacaaatgat----aagtagcatattttcttaaaaaaatttactaaa |
8974923 |
T |
|
| Q |
400 |
aactctaagagaaccacaagatgtatgcatcaaactctgcaactcagtaaataaactaacaattaatatacctgcggatcaacatcaggattaatccgaa |
499 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8974922 |
aactctaagagaaccacaagatgtaagcatcaaactctgcaactcagtaaataaactaacaattaatatacctgcggatcaacatcaggattaatccgaa |
8974823 |
T |
|
| Q |
500 |
gcaaaacattcaccctctttccagcaattcttgcagctgccacaatgttttccaagtcaaattcactgtcaatgttgacaaacacgcctgcttcggcagc |
599 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8974822 |
gcaaaacattcaccctctttccagcaattcttgcagctgccacaatgttttccaagtcaaattcactgtcaatgttgacaaacacgcctgcttcggcagc |
8974723 |
T |
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| Q |
600 |
caaaaccaaatcctccaagatttt |
623 |
Q |
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|||||||||||||||||||||||| |
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| T |
8974722 |
caaaaccaaatcctccaagatttt |
8974699 |
T |
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