View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19193_high_20 (Length: 448)
Name: NF19193_high_20
Description: NF19193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19193_high_20 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 409; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 13 - 448
Target Start/End: Original strand, 5512075 - 5512510
Alignment:
| Q |
13 |
attattcttgagggtgacaaataaggacgtaatttacgatcacatatcaaatcatatcaacagtatttcaatcttgttattttccttttcaagctcttga |
112 |
Q |
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| T |
5512075 |
attattcttgagggtgacaaataaggacgtaatttacgatcacatatcaaatcatatcaacagtatttcaatcttgttattttccttttcaagctcttga |
5512174 |
T |
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| Q |
113 |
atattgatatccatgctcaattttatttgaagctgttttgcgtaatttggtacgactgatacaggttattcttggatatttttctctttataatatttct |
212 |
Q |
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| T |
5512175 |
atattgatatccatgctcaattttatttgaagctgttttgcgtaatttggtacgactgatacaggttattcttggatatttttctctttataatatttct |
5512274 |
T |
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| Q |
213 |
tgttgtccttcttataaagatcgtaattacttgagttttgcatcatttccatcctaagtactatgtgttccactagtttaacaattgatcatgattaata |
312 |
Q |
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| T |
5512275 |
tgttgtccttcttataaagatcgtaattacttgagttttgcatcatttccatcctaagtactatgtgttccactagtttaacaattgatcatgattaata |
5512374 |
T |
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| Q |
313 |
tgtgaattttttcggttacataattaatatgttaactaattatattaaatgaataatctcnnnnnnnnntagtcgtagttagacaaaaactgatgaaatg |
412 |
Q |
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| T |
5512375 |
tgtgaattttttcggttacataattaatatgttaactaattatattaaatgaataatctcaaataaaaatagtcgtagttagacaaaaactgatgaaatg |
5512474 |
T |
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| Q |
413 |
cacatggtggtccattccgtttgataatatgacccc |
448 |
Q |
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| T |
5512475 |
cacatggtggtccattccgtttgataatatgacccc |
5512510 |
T |
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