View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19193_high_29 (Length: 407)
Name: NF19193_high_29
Description: NF19193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19193_high_29 |
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Alignment Details
Target: chr4 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 12 - 392
Target Start/End: Original strand, 26194965 - 26195343
Alignment:
| Q |
12 |
atcatcactacgagactttaaagcctttaccacattaagaaaatcaccttccaccacaatgtttnnnnnnnncccatataatagacaaattaaattgaca |
111 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
26194965 |
atcatcactatgagactttaaagcctttaccacattaagagaatcaccttccaccacaatgtttcaaaaac-cccatataatagacaaattaaattgaca |
26195063 |
T |
|
| Q |
112 |
accaaaatccaagagcttcagcgatgttagcattaggaagcgcaacaaagttccatgtaacagctactaaaacaatatctttcgagtctctaactatagc |
211 |
Q |
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|||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
26195064 |
accaaaattcaagagcttcagcgatgttagcatcaggaagcgcaacaaagttccatgcaacagctactaaaacaatatctttcgagtctctaactatagc |
26195163 |
T |
|
| Q |
212 |
tactactccccatttattatgaacaagtctagatgcatcaatgttcaatctgaaagtagacatgggaggaggactcaaacttgagggggaagatatagag |
311 |
Q |
| |
|
||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| |||||||||| |||||||||||| |
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| T |
26195164 |
taccactccccatttattatgaacaagttccgatgcatcaatgttcaatctgaaagtagacgtgggaggaggactccaacttgagggagaagatatagag |
26195263 |
T |
|
| Q |
312 |
atagttggctccacatcaacatgagtattcacaagtcctttgtaatcttcaatgatattcgatgcttttttggacaatatt |
392 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
26195264 |
atagttggctccacatcaacatgagtattcacaagtcctttgtaatcttcaatgatattcgatgc-tttttggacaatatt |
26195343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 86 - 363
Target Start/End: Complemental strand, 45338859 - 45338578
Alignment:
| Q |
86 |
catataatagacaaattaaattgacaaccaaaatccaagagcttcagcgatgttagcattaggaagcgcaacaaagttccatgtaacagctactaaaaca |
185 |
Q |
| |
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||||| |||| |||||| ||||| |||| |||||||||||||||||| |||||||| | ||||||||| ||||| ||| |||| |||| || ||| |
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| T |
45338859 |
catatcataggcaaattgaattgccaactgaaatccaagagcttcagcaatgttagcttcaggaagcgcctcaaagctccttgtagcagccgcttttaca |
45338760 |
T |
|
| Q |
186 |
atatctttcgagtctctaactatagctactactccccatttattatgaacaagtctagatgcatcaatgttcaatctgaaagtagacatgggaggaggac |
285 |
Q |
| |
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| | | |||||| |||||||||| |||| | |||| |||||| ||| | |||||||||||| |||||| |||| | ||| |||||||||||| |
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| T |
45338759 |
aaacgatgtgagtcttaaactatagctcctacactccatatattatcaaccggactagatgcatca---ttcaatttgaaggaagaagtgggaggaggac |
45338663 |
T |
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| Q |
286 |
tcaaacttgagggggaagatatagagat-------agttggctccacatcaacatgagtattcacaagtcctttgtaatcttcaa |
363 |
Q |
| |
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| || | |||| | ||||||||||||| |||||||||||||||||||| |||||| | |||||||||||||||||||| |
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| T |
45338662 |
ttcaagtagaggagaaagatatagagattatagatagttggctccacatcaacataagtatttataagtcctttgtaatcttcaa |
45338578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 87 - 392
Target Start/End: Original strand, 10349712 - 10350008
Alignment:
| Q |
87 |
atataatagacaaattaaattgacaaccaaaatccaagagcttcagcgatgttagcattaggaagcgcaacaaagttccatgtaacagctactaaaacaa |
186 |
Q |
| |
|
|||| ||||||||||| ||||| |||||||||||||||| ||| ||| || ||||||| | ||||||| ||||||||||||| ||| | ||||||||| |
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|
| T |
10349712 |
atattatagacaaattgaattggcaaccaaaatccaagaactttagcaatattagcatcaagaagcgcctcaaagttccatgtggcagttgctaaaacaa |
10349811 |
T |
|
| Q |
187 |
tatctttcgagtctctaactatagctactactccccatttattatgaacaagtctagatgcatcaatgttcaatctgaaagtagacatgggaggaggact |
286 |
Q |
| |
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| | |||||||||| || |||| |||||||| |||| ||| |||||| ||||| |||||||||| |||| | | | || |||| ||| |
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| T |
10349812 |
aacataatgagtctctaa------ctcctacaccccatttgttatcaaccggtctaggtgcattaatgttcaatttgaaggaaaatat---tggagaact |
10349902 |
T |
|
| Q |
287 |
caaacttgagggggaagatatagagatagttggctccacatcaaca-tgagtattcacaagtcctttgtaatcttcaatgatattcgatgcttttttgga |
385 |
Q |
| |
|
| || | |||||| |||| ||||| ||| | ||||||| |||||| ||||||||| ||||||| |||||||||||||||| || || || |||||||| |
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|
| T |
10349903 |
ccaattagaggggaaagagatagaaataatccgctccacgtcaacattgagtattcttaagtcctctgtaatcttcaatgatttttgaagc-tttttgga |
10350001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 31 - 166
Target Start/End: Complemental strand, 37120785 - 37120652
Alignment:
| Q |
31 |
aaagcctttaccacattaagaaaatcaccttccaccacaatgtttnnnnnnnncccatataatagacaaattaaattgacaaccaaaatccaagagcttc |
130 |
Q |
| |
|
|||||||| |||||||||||| ||||||||||||| | ||||||| ||||||| |||| |||||| ||||| |||||||| |||||||||||| |
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| T |
37120785 |
aaagccttaaccacattaagataatcaccttccacaataatgtttctaaaa--cccatatcataggcaaattgaattgccaaccaaagtccaagagcttc |
37120688 |
T |
|
| Q |
131 |
agcgatgttagcattaggaagcgcaacaaagttcca |
166 |
Q |
| |
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| | ||| |||||| |||||| || |||||||||| |
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| T |
37120687 |
aacaatggtagcatcaggaagtgcctcaaagttcca |
37120652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 302 - 392
Target Start/End: Complemental strand, 35454678 - 35454585
Alignment:
| Q |
302 |
agatatagagatagttggctccacatcaacatgagtattcacaagtcctt----tgtaatcttcaatgatattcgatgcttttttggacaatatt |
392 |
Q |
| |
|
||||||||| ||||||| |||||| ||||||||||||||||||||||||| | ||||||||||| |||||| | | |||||||||||||||| |
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| T |
35454678 |
agatatagaaatagttgactccacgtcaacatgagtattcacaagtcctttatatttaatcttcaataatattccaag-ttttttggacaatatt |
35454585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 31 - 207
Target Start/End: Original strand, 18927409 - 18927583
Alignment:
| Q |
31 |
aaagcctttaccacattaagaaaatcaccttccaccacaatgtttnnnnnnnncccatataatagacaaattaaattgacaaccaaaatccaagagcttc |
130 |
Q |
| |
|
|||||||| |||||| ||||| ||||||||||||| | ||||||| ||||||| |||| ||||| ||||| ||||| ||||| ||||||||| |
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| T |
18927409 |
aaagccttgaccacaataagagaatcaccttccacgataatgtttctaaaa--cccatatcataggaaaattgaattgccaacctaaatctaagagcttc |
18927506 |
T |
|
| Q |
131 |
agcgatgttagcattaggaagcgcaacaaagttccatgtaacagctactaaaacaatatctttcgagtctctaacta |
207 |
Q |
| |
|
| | ||| |||||| |||||| || |||||||||||| | |||| |||||| || | ||| |||||||| ||||| |
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|
| T |
18927507 |
aacaatggtagcatcaggaagtgcctcaaagttccatgaagcagccactaaactaaaaccttccgagtctcgaacta |
18927583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 299 - 371
Target Start/End: Original strand, 5040549 - 5040621
Alignment:
| Q |
299 |
ggaagatatagagatagttggctccacatcaacatgagtattcacaagtcctttgtaatcttcaatgatattc |
371 |
Q |
| |
|
||||||||| || ||||| |||||| ||||| |||||||||| ||||| || || |||||||||||||||| |
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| T |
5040549 |
ggaagatatcgaaatagtcaactccacgtcaacgtgagtattcataagtctttcgtcatcttcaatgatattc |
5040621 |
T |
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