View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19193_high_30 (Length: 398)
Name: NF19193_high_30
Description: NF19193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19193_high_30 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 380; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 3 - 382
Target Start/End: Complemental strand, 43144738 - 43144359
Alignment:
| Q |
3 |
atcatgaatagaacattaaagtttctaatctaacattgcagctaagttgaaaaataacccaattcagcatcagaattctgccaaaatgttcacatgaatc |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43144738 |
atcatgaatagaacattaaagtttctaatctaacattgcagctaagttgaaaaataacccaattcagcatcagaattctgccaaaatgttcacatgaatc |
43144639 |
T |
|
| Q |
103 |
aacactaacaacctacctaaaaagaaaaattattgtgctcaccagcagcagaataggccatttcttcaagtgagtatcccttactataaaatctaaatac |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43144638 |
aacactaacaacctacctaaaaagaaaaattattgtgctcaccagcagcagaataggccatttcttcaagtgagtatcccttactataaaatctaaatac |
43144539 |
T |
|
| Q |
203 |
tgctgcaagatgaatcattgccatcaagaatgatgctaccaatgcccatgacacatagcagtgaacaccagacaatgcacggttcatcatccaattaatg |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43144538 |
tgctgcaagatgaatcattgccatcaagaatgatgctaccaatgcccatgacacatagcagtgaacaccagacaatgcacggttcatcatccaattaatg |
43144439 |
T |
|
| Q |
303 |
tttgttgtatatgactccagagcgaatgtttgtttcctcaagtaattccagtatctacatgttttttaaaactaaatcat |
382 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43144438 |
tttgttgtatatgactccagagcgaatgtttgtttcctcaagtaattccagtatctacatgttttttaaaactaaatcat |
43144359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 31 - 382
Target Start/End: Complemental strand, 43157072 - 43156721
Alignment:
| Q |
31 |
tctaacattgcagctaagttgaaaaataaccca-attcagcatcagaattctgccaaaatgttcacatgaatcaacactaacaacctacctaaaaagaaa |
129 |
Q |
| |
|
||||||| |||| |||| ||||| |||||| || ||||||||||||||| || ||||||||||||||||||||||||||||||||||||| |||||| || |
|
|
| T |
43157072 |
tctaacactgcaactaaattgaacaataacgcatattcagcatcagaatcctcccaaaatgttcacatgaatcaacactaacaacctaccaaaaaaggaa |
43156973 |
T |
|
| Q |
130 |
aattattgtgctcaccagcagcagaataggccatttcttcaagtgagtatcccttactataaaatctaaatactgctgcaagatgaatcattgccatcaa |
229 |
Q |
| |
|
|| || ||||||||||||||| || ||||||| ||||||||||||| ||||| |||||||||||||||||| ||||||||||||||||| |||| || || |
|
|
| T |
43156972 |
aagtagtgtgctcaccagcagaagtataggccgtttcttcaagtgaatatccgttactataaaatctaaatgctgctgcaagatgaatcgttgcaataaa |
43156873 |
T |
|
| Q |
230 |
gaatgatgctaccaatgcccatgacacatagcagtgaacaccagacaatgcacggttcatcatccaattaatgtttgttgtatatgactccagagcgaat |
329 |
Q |
| |
|
|||| |||||| ||| ||||||||| |||||||||||||||| |||||||||||||||||| ||| ||||||||||||||||||||||||| | | ||| |
|
|
| T |
43156872 |
aaatggtgctacgaatccccatgacaaatagcagtgaacaccaaacaatgcacggttcatcacccagttaatgtttgttgtatatgactccaaaacaaat |
43156773 |
T |
|
| Q |
330 |
gtttgtttcctcaagtaattccagtatctacatgttttttaaaactaaatcat |
382 |
Q |
| |
|
||||||||||||||||||||||| |||||||| | |||| ||||||||||||| |
|
|
| T |
43156772 |
gtttgtttcctcaagtaattccaatatctacacg-ttttaaaaactaaatcat |
43156721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 103 - 185
Target Start/End: Original strand, 33832991 - 33833073
Alignment:
| Q |
103 |
aacactaacaacctacctaaaaagaaaaattattgtgctcaccagcagcagaataggccatttcttcaagtgagtatccctta |
185 |
Q |
| |
|
||||||||||||||||||||||||||||| | ||| ||||||| ||| || ||||||||||| || | |||||| |||||| |
|
|
| T |
33832991 |
aacactaacaacctacctaaaaagaaaaagttgtgttctcaccaccagaagtgtaggccatttcctcgactgagtaaccctta |
33833073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University