View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19193_high_35 (Length: 390)
Name: NF19193_high_35
Description: NF19193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19193_high_35 |
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Alignment Details
Target: chr7 (Bit Score: 337; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 14 - 374
Target Start/End: Complemental strand, 35381646 - 35381286
Alignment:
| Q |
14 |
aatattacaaagaaggaaatcaagcgggtatattacgttggtaatcactaaatcattctccatggagaatacaaaatttgaaatgataaatgaaagagag |
113 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35381646 |
aatactacaaagaaggaaatcaagcgggtatattacgttggtaatcactaaatcattctccatggagaatacaaaatttgaaatgataaatgaaagagag |
35381547 |
T |
|
| Q |
114 |
agaaaaatacttgtgttttgaatcttggtaaaagccaacattgtaacttgagatcattgaaagtgttgctttctaagacaaaagcacgtctactaatcca |
213 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35381546 |
aaaaaaatacttgtgttttgaatcttggtaaaagccaacattgtaacttgagatcattgaaagtgttgctttctaagacaaaagcacgtctactaatcca |
35381447 |
T |
|
| Q |
214 |
tgtcataagcatatagcacattgtaaagggccacattaaatataggtaccatttagatgtttgaggattggaggctaatgaagcaaagcctaaacgtaat |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
35381446 |
tgtcataagcatatagcacattgtaaagggccacattaaatataggtaccatttagatgtttgaggattggaggctaatgaagtaaagcctaaacgtaat |
35381347 |
T |
|
| Q |
314 |
tgatagatggaactaagagtagttaaatctgtcaagtggaccacatctggtgactcctttg |
374 |
Q |
| |
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||||||||||||||||| |||||||||| ||| |||||||||||||||||||||||||||| |
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| T |
35381346 |
tgatagatggaactaagtgtagttaaatgtgttaagtggaccacatctggtgactcctttg |
35381286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 120 - 374
Target Start/End: Complemental strand, 35370973 - 35370719
Alignment:
| Q |
120 |
atacttgtgttttgaatcttggtaaaagccaacattgtaacttgagatcattgaaagtgttgctttctaagacaaaagcacgtctactaatccatgtcat |
219 |
Q |
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|||||||| |||| |||||||||| |||||||||||| |||||||||| ||||| | |||||||||||| ||||| ||||||| || |||||| ||||| |
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| T |
35370973 |
atacttgtcttttaaatcttggtataagccaacattgcaacttgagattcttgaaggagttgctttctaaaacaaaggcacgtccacaaatccaagtcat |
35370874 |
T |
|
| Q |
220 |
aagcatatagcacattgtaaagggccacattaaatataggtaccatttagatgtttgaggattggaggctaatgaagcaaagcctaaacgtaattgatag |
319 |
Q |
| |
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||||||| || |||||||||||||||||||||||| |||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |
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| T |
35370873 |
aagcatagagaacattgtaaagggccacattaaatgtaggtaccatttagatgtttgagggttggatgctaatgaagcaaagcctaaacgtaattgatag |
35370774 |
T |
|
| Q |
320 |
atggaactaagagtagttaaatctgtcaagtggaccacatctggtgactcctttg |
374 |
Q |
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|||||| ||| || ||||||| ||| |||||||||||||||||||||||||||| |
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| T |
35370773 |
atggaattaaatgttgttaaatgtgttaagtggaccacatctggtgactcctttg |
35370719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 43 - 374
Target Start/End: Complemental strand, 35355608 - 35355272
Alignment:
| Q |
43 |
atattacgttggtaatcactaaatcattctccatggagaatacaaaatttgaaa--tgataaatga-aagag--agagaaaaatacttgtgttttgaatc |
137 |
Q |
| |
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||||||| ||||||||||||||||||||||||| |||||| ||||||| ||||| | | |||||| |||| ||| |||||||| |||||||| |||| |
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| T |
35355608 |
atattacattggtaatcactaaatcattctccaaggagaaaacaaaatctgaaaaatcacaaatgagaagaagaagaaaaaaatacctgtgttttaaatc |
35355509 |
T |
|
| Q |
138 |
ttggtaaaagccaacattgtaacttgagatcattgaaagtgttgctttctaagacaaaagcacgtctactaatccatgtcataagcatatagcacattgt |
237 |
Q |
| |
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|||||| || ||||| ||||||||| ||||||||||| |||||||||||||| ||||| ||||||| || |||||| || ||||||||| || ||||||| |
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| T |
35355508 |
ttggtataatccaactttgtaacttaagatcattgaaggtgttgctttctaaaacaaaggcacgtccacaaatccaagtgataagcatagagaacattgt |
35355409 |
T |
|
| Q |
238 |
aaagggccacattaaatataggtaccatttagatgtttgaggattggaggctaatgaagcaaagcctaaacgtaattgatagatggaactaagagtagtt |
337 |
Q |
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||| ||||||||||| | ||| |||||||||||||||||||||||||| ||||| ||||||||||||||||| | |||||| || ||| ||| |||||| |
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| T |
35355408 |
aaatggccacattaagtgtagataccatttagatgtttgaggattggaagctaaggaagcaaagcctaaacgcatttgataaattgaatcaagtgtagtt |
35355309 |
T |
|
| Q |
338 |
aaatctgtcaagtggaccacatctggtgactcctttg |
374 |
Q |
| |
|
|||| ||| |||||||||||||||||||||||||||| |
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|
| T |
35355308 |
aaatgtgttaagtggaccacatctggtgactcctttg |
35355272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 116; Significance: 6e-59; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 120 - 371
Target Start/End: Complemental strand, 19685518 - 19685267
Alignment:
| Q |
120 |
atacttgtgttttgaatcttggtaaaagccaacattgtaacttgagatcattgaaagtgttgctttctaagacaaaagcacgtctactaatccatgtcat |
219 |
Q |
| |
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||||||||||||| |||||||||| ||||||||| || | ||||||||| ||||| | ||| |||||||| ||||| |||| || ||||||||| |||| |
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| T |
19685518 |
atacttgtgttttaaatcttggtataagccaacactgcagcttgagatctttgaaggagttactttctaaaacaaaggcacttccactaatccaagtcaa |
19685419 |
T |
|
| Q |
220 |
aagcatatagcacattgtaaagggccacattaaatataggtaccatttagatgtttgaggattggaggctaatgaagcaaagcctaaacgtaattgatag |
319 |
Q |
| |
|
||||||| ||||||||||||| ||||||||||||| || |||||||| ||||||||||| ||||||||||| ||||||| |||||||||| |||| || |
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|
| T |
19685418 |
aagcatagagcacattgtaaaaggccacattaaattgagataccatttcgatgtttgagggttggaggctaaggaagcaagccctaaacgtagttgaaag |
19685319 |
T |
|
| Q |
320 |
atggaactaagagtagttaaatctgtcaagtggaccacatctggtgactcct |
371 |
Q |
| |
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|||||| ||| || ||||||| ||| ||||| ||||||||||||||||||| |
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| T |
19685318 |
atggaatcaagtgttgttaaatgtgttaagtgcaccacatctggtgactcct |
19685267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 120 - 371
Target Start/End: Original strand, 19629133 - 19629384
Alignment:
| Q |
120 |
atacttgtgttttgaatcttggtaaaagccaacattgtaacttgagatcattgaaagtgttgctttctaagacaaaagcacgtctactaatccatgtcat |
219 |
Q |
| |
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|||||||| |||| |||||||||| ||||||||| || | ||||||||| ||||| ||| |||||||| |||| ||| | | ||||||||| |||| |
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| T |
19629133 |
atacttgtattttaaatcttggtataagccaacactgcagcttgagatctttgaagaagttactttctaaaacaatggcatgcccactaatccaagtcac |
19629232 |
T |
|
| Q |
220 |
aagcatatagcacattgtaaagggccacattaaatataggtaccatttagatgtttgaggattggaggctaatgaagcaaagcctaaacgtaattgatag |
319 |
Q |
| |
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||||||| |||||| |||||| ||||||||||||| || ||||||||||| |||||||| ||||||||||| |||||||| ||||| |||| |||| || |
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| T |
19629233 |
aagcatagagcacaatgtaaaaggccacattaaattgagataccatttagaagtttgagggttggaggctaaggaagcaaaccctaagcgtagttgaaag |
19629332 |
T |
|
| Q |
320 |
atggaactaagagtagttaaatctgtcaagtggaccacatctggtgactcct |
371 |
Q |
| |
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|| ||| ||| || ||||||| ||| ||||| |||||||||||||| |||| |
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|
| T |
19629333 |
atagaatcaagtgttgttaaatgtgttaagtgcaccacatctggtgattcct |
19629384 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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