View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19193_high_37 (Length: 386)
Name: NF19193_high_37
Description: NF19193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19193_high_37 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 9 - 371
Target Start/End: Complemental strand, 42145439 - 42145077
Alignment:
| Q |
9 |
gagatgaatcgttaacatatcggtttagttttaccaaacttgtaacagttaagtatagttcggttttcctttcctgaaccgagcgatgaacagtccacaa |
108 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42145439 |
gagatgaatcgttaacatatcggttcagttttaccaaacttgtaacagttaagtatagttcggttttcctttcctgaaccgagcgatgaacagtccacaa |
42145340 |
T |
|
| Q |
109 |
agatatgtttaacaaacattgctgctacttgctacttctttgtgcatacctggacatagtagccacctgtaagaaggaataacataagtatcaaagaagc |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42145339 |
agatatgtttaacaaacattgctgctacttgctacttctttgtgcatacctggacatagtagccacctgtaagaaggaataacataagtatcaaagaagc |
42145240 |
T |
|
| Q |
209 |
aaccattcctgctctttgaatgctcataactgcagctccaaatagttctcctgccccctattaacaacagcataaatattcattaatcattgagctttaa |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42145239 |
aaccattcctgctctttgaatgctcataactgcagctccaaatagttctcctgccccctattaacaacagcataaatattcattaatcattgagctttaa |
42145140 |
T |
|
| Q |
309 |
acaaacaattattaacctgttctgagtcttgacacaacttacttgacttgttattgctattag |
371 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42145139 |
acaaacaattattaacctgttctgagtcttgacacaacttacttgacttgttattgctattag |
42145077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University