View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19193_high_42 (Length: 361)

Name: NF19193_high_42
Description: NF19193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19193_high_42
NF19193_high_42
[»] chr5 (30 HSPs)
chr5 (11-347)||(37428339-37428674)
chr5 (11-235)||(37382975-37383199)
chr5 (11-235)||(37434997-37435221)
chr5 (12-216)||(37593492-37593696)
chr5 (12-216)||(37695883-37696087)
chr5 (11-216)||(37532387-37532592)
chr5 (12-221)||(37823192-37823401)
chr5 (12-221)||(37401661-37401870)
chr5 (12-221)||(37639034-37639243)
chr5 (31-235)||(37393526-37393730)
chr5 (66-221)||(37710846-37711001)
chr5 (66-235)||(37702025-37702194)
chr5 (251-338)||(37382561-37382648)
chr5 (251-332)||(37401104-37401185)
chr5 (251-348)||(37823742-37823839)
chr5 (251-329)||(37393121-37393199)
chr5 (251-337)||(37639719-37639805)
chr5 (251-332)||(37696568-37696649)
chr5 (251-329)||(37532938-37533016)
chr5 (251-329)||(37594177-37594255)
chr5 (251-337)||(37711477-37711563)
chr5 (251-329)||(37702521-37702599)
chr5 (252-337)||(37435549-37435634)
chr5 (251-324)||(37401247-37401320)
chr5 (251-324)||(37639584-37639657)
chr5 (251-324)||(37711342-37711415)
chr5 (293-335)||(37413485-37413527)
chr5 (150-235)||(37413814-37413899)
chr5 (251-324)||(37594042-37594115)
chr5 (251-324)||(37696433-37696506)
[»] chr4 (7 HSPs)
chr4 (11-235)||(16843645-16843869)
chr4 (11-235)||(16846313-16846536)
chr4 (11-235)||(24218380-24218604)
chr4 (251-334)||(24217970-24218053)
chr4 (251-337)||(16845896-16845982)
chr4 (251-348)||(16843086-16843183)
chr4 (251-324)||(16843245-16843318)
[»] chr3 (1 HSPs)
chr3 (20-195)||(14552668-14552843)


Alignment Details
Target: chr5 (Bit Score: 309; Significance: 1e-174; HSPs: 30)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 11 - 347
Target Start/End: Original strand, 37428339 - 37428674
Alignment:
Q  11 cacagaatcattatagtaattggccttacccatgtactgcaaaccaatttggctatcattcacattcatcattccttgaaaattcctgatgcatgttgtc 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37428339 cacagaatcattatagtaattggccttacccatgtactgcaaaccaatttggctatcattcacattcatcattccttgaaaattcctgatgcatgttgtc 37428438  T
Q  111 ggcaagggaccactaaaattgttattagagatgtcgaaaattctcaacttgggaaatggatgcttggtcatagaacaagtgattgtaccatgcagtttat 210  Q
    |||||||||||||||||| | |||||| ||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||    
T  37428439 ggcaagggaccactaaaaattttattatagatgtcgaaaattctcaacttgggaa-tggatgtttggtcatagaacaagtgattgtaccatgcagtttat 37428537  T
Q  211 ttgatcttaaaatgagaacctgtaaaaagtatttgatgcatgaagttgttgttagagagtaaaaagtattcaatgccataaggtggaatcggaagatctc 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  37428538 ttgatcttaaaatgagaacctgtaaaaagtatttgatgcatgaagttgttgttagagagtaaaaagtattcaatgccataaggtggaattggaagatctc 37428637  T
Q  311 cttgcaacttgttgaaactgagatcaacgtgccaaat 347  Q
    |||||||||||||||||||||||||||||||||||||    
T  37428638 cttgcaacttgttgaaactgagatcaacgtgccaaat 37428674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 11 - 235
Target Start/End: Complemental strand, 37383199 - 37382975
Alignment:
Q  11 cacagaatcattatagtaattggccttacccatgtactgcaaaccaatttggctatcattcacattcatcattccttgaaaattcctgatgcatgttgtc 110  Q
    ||||||||||||||||||||||| |||||||||||| ||||||||| | |   | |||||||||||||||||||||||||||||| ||||||| | |||     
T  37383199 cacagaatcattatagtaattggacttacccatgtattgcaaaccagtgttattgtcattcacattcatcattccttgaaaattcttgatgcacgatgtt 37383100  T
Q  111 ggcaagggaccactaaaattgttattagagatgtcgaaaattctcaacttgggaaatggatgcttggtcatagaacaagtgattgtaccatgcagtttat 210  Q
    |||||||| ||| |||||||||| |||||||  || |||||||||||||||||||||||||| |||||  |||| || |||||||  ||||| |||||||    
T  37383099 ggcaagggcccaataaaattgttgttagagacatcaaaaattctcaacttgggaaatggatgtttggtgctagagcatgtgattgcgccatgaagtttat 37383000  T
Q  211 ttgatcttaaaatgagaacctgtaa 235  Q
    ||||||||||| |||| ||||||||    
T  37382999 ttgatcttaaactgagcacctgtaa 37382975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 11 - 235
Target Start/End: Original strand, 37434997 - 37435221
Alignment:
Q  11 cacagaatcattatagtaattggccttacccatgtactgcaaaccaatttggctatcattcacattcatcattccttgaaaattcctgatgcatgttgtc 110  Q
    ||||||||||||||||||||||  |||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||| |||| |||| |||     
T  37434997 cacagaatcattatagtaattgttcttacccatgtattgcaaaccaatctggctatcattcacattcatcattccttgaaagttcttgatacatgatgtt 37435096  T
Q  111 ggcaagggaccactaaaattgttattagagatgtcgaaaattctcaacttgggaaatggatgcttggtcatagaacaagtgattgtaccatgcagtttat 210  Q
    |||||||  |||||||||||||||    ||||||| |||||||| ||||| | ||| ||||| |||||  ||||||| ||||||| |||||  |||||||    
T  37435097 ggcaaggatccactaaaattgttaccgaagatgtcaaaaattcttaacttagaaaaaggatggttggtgttagaacaggtgattgaaccattaagtttat 37435196  T
Q  211 ttgatcttaaaatgagaacctgtaa 235  Q
    ||||||||||| |||| ||||||||    
T  37435197 ttgatcttaaactgagtacctgtaa 37435221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 12 - 216
Target Start/End: Original strand, 37593492 - 37593696
Alignment:
Q  12 acagaatcattatagtaattggccttacccatgtactgcaaaccaatttggctatcattcacattcatcattccttgaaaattcctgatgcatgttgtcg 111  Q
    |||||||||||||||||||   ||  |||| |||| ||||||||||||||||| |||||||||||||||||||||||||| ||| ||||||||| ||| |    
T  37593492 acagaatcattatagtaataacccacacccttgtattgcaaaccaatttggctgtcattcacattcatcattccttgaaagttcttgatgcatgatgttg 37593591  T
Q  112 gcaagggaccactaaaattgttattagagatgtcgaaaattctcaacttgggaaatggatgcttggtcatagaacaagtgattgtaccatgcagtttatt 211  Q
    ||||||| ||||||||||||||  |||| |  || |||||||||||||| ||||||| |||||||||  ||||||||||||||| |||||| || |||||    
T  37593592 gcaagggcccactaaaattgttgatagaaacatcaaaaattctcaacttaggaaatgaatgcttggtgctagaacaagtgattgcaccatgaagattatt 37593691  T
Q  212 tgatc 216  Q
    |||||    
T  37593692 tgatc 37593696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 12 - 216
Target Start/End: Original strand, 37695883 - 37696087
Alignment:
Q  12 acagaatcattatagtaattggccttacccatgtactgcaaaccaatttggctatcattcacattcatcattccttgaaaattcctgatgcatgttgtcg 111  Q
    |||||||||||||||||||   | | |||| |||| ||||||||||||||||| |||||||||||||||||||||||||| ||| ||||||||| ||| |    
T  37695883 acagaatcattatagtaataaccgtcacccttgtattgcaaaccaatttggctgtcattcacattcatcattccttgaaagttcttgatgcatgatgttg 37695982  T
Q  112 gcaagggaccactaaaattgttattagagatgtcgaaaattctcaacttgggaaatggatgcttggtcatagaacaagtgattgtaccatgcagtttatt 211  Q
    ||||||| ||||||||||||||  |||| |  || |||||||||||||| ||||||| |||||||||  ||||||||||||||| |||||| || |||||    
T  37695983 gcaagggcccactaaaattgttgatagaaacatcaaaaattctcaacttaggaaatgaatgcttggtgctagaacaagtgattgcaccatgaagattatt 37696082  T
Q  212 tgatc 216  Q
    |||||    
T  37696083 tgatc 37696087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 11 - 216
Target Start/End: Original strand, 37532387 - 37532592
Alignment:
Q  11 cacagaatcattatagtaattggccttacccatgtactgcaaaccaatttggctatcattcacattcatcattccttgaaaattcctgatgcatgttgtc 110  Q
    ||||||||||||||||||||   ||  |||| |||| ||||||||||||||||| |||||||||||||||||||||| ||| ||| ||||||||| | |     
T  37532387 cacagaatcattatagtaataacccgcacccttgtattgcaaaccaatttggctgtcattcacattcatcattcctttaaagttcttgatgcatgatatt 37532486  T
Q  111 ggcaagggaccactaaaattgttattagagatgtcgaaaattctcaacttgggaaatggatgcttggtcatagaacaagtgattgtaccatgcagtttat 210  Q
    |||||||| |||||||||||||| ||||| |  || |||||||||||||| ||||||| |||||||||  ||||||||||||||| |||||| || ||||    
T  37532487 ggcaagggcccactaaaattgttgttagaaacatcaaaaattctcaacttaggaaatgaatgcttggtgctagaacaagtgattgcaccatgaagattat 37532586  T
Q  211 ttgatc 216  Q
    ||||||    
T  37532587 ttgatc 37532592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 12 - 221
Target Start/End: Original strand, 37823192 - 37823401
Alignment:
Q  12 acagaatcattatagtaattggccttacccatgtactgcaaaccaatttggctatcattcacattcatcattccttgaaaattcctgatgcatgttgtcg 111  Q
    ||||||||||| |||||||  |  | ||||||||| |||||||||||||||   ||| |||||||||||||||||||||| ||| ||||||||| ||| |    
T  37823192 acagaatcattgtagtaataagagtcacccatgtattgcaaaccaatttggtcgtcactcacattcatcattccttgaaagttcttgatgcatgatgttg 37823291  T
Q  112 gcaagggaccactaaaattgttattagagatgtcgaaaattctcaacttgggaaatggatgcttggtcatagaacaagtgattgtaccatgcagtttatt 211  Q
    ||||||| |||||||||||||| |||||||  || |||||||||||||||||||||| |||||||||  ||||||| ||||||| |||||| || |||||    
T  37823292 gcaagggcccactaaaattgttgttagagacatcaaaaattctcaacttgggaaatgtatgcttggtgctagaacaggtgattgcaccatgaagattatt 37823391  T
Q  212 tgatcttaaa 221  Q
    ||||| ||||    
T  37823392 tgatcgtaaa 37823401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 12 - 221
Target Start/End: Complemental strand, 37401870 - 37401661
Alignment:
Q  12 acagaatcattatagtaattggccttacccatgtactgcaaaccaatttggctatcattcacattcatcattccttgaaaattcctgatgcatgttgtcg 111  Q
    ||||||||||| |||||||  |  | ||||||||| ||||||||| | |   | |||||||||||||||||||||||||| ||| ||||||||| ||| |    
T  37401870 acagaatcattgtagtaataagagtcacccatgtattgcaaaccagtgttattgtcattcacattcatcattccttgaaagttcttgatgcatgatgttg 37401771  T
Q  112 gcaagggaccactaaaattgttattagagatgtcgaaaattctcaacttgggaaatggatgcttggtcatagaacaagtgattgtaccatgcagtttatt 211  Q
    ||||||| |||||||||||||| |||||||  || |||||||||||||||||||||| |||||||||  ||||||| ||||||| |||||| || |||||    
T  37401770 gcaagggcccactaaaattgttgttagagacatcaaaaattctcaacttgggaaatgtatgcttggtgctagaacaggtgattgcaccatgaagattatt 37401671  T
Q  212 tgatcttaaa 221  Q
    ||||| ||||    
T  37401670 tgatcgtaaa 37401661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 12 - 221
Target Start/End: Original strand, 37639034 - 37639243
Alignment:
Q  12 acagaatcattatagtaattggccttacccatgtactgcaaaccaatttggctatcattcacattcatcattccttgaaaattcctgatgcatgttgtcg 111  Q
    ||||||||||| |||||||  |  | ||||||||| ||||||||| | |   | |||||||||||||||||||||||||| ||| ||||||||| ||| |    
T  37639034 acagaatcattgtagtaataagagtcacccatgtattgcaaaccagtgttattgtcattcacattcatcattccttgaaagttcttgatgcatgatgttg 37639133  T
Q  112 gcaagggaccactaaaattgttattagagatgtcgaaaattctcaacttgggaaatggatgcttggtcatagaacaagtgattgtaccatgcagtttatt 211  Q
    ||||||| |||||||||||||| |||||||  || |||||||||||||||||||||| |||||||||  ||||||| ||||||| |||||| || |||||    
T  37639134 gcaagggcccactaaaattgttgttagagacatcaaaaattctcaacttgggaaatgtatgcttggtgctagaacaggtgattgcaccatgaagattatt 37639233  T
Q  212 tgatcttaaa 221  Q
    ||||| ||||    
T  37639234 tgatcgtaaa 37639243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 31 - 235
Target Start/End: Complemental strand, 37393730 - 37393526
Alignment:
Q  31 tggccttacccatgtactgcaaaccaatttggctatcattcacattcatcattccttgaaaattcctgatgcatgttgtcggcaagggaccactaaaatt 130  Q
    |||| ||||||||||| ||||||||||||||||| | |||||||| ||||||||||||||| ||| ||| ||||| ||| |||||||| |||||||||||    
T  37393730 tggctttacccatgtattgcaaaccaatttggctgttattcacatccatcattccttgaaagttcttgaagcatgatgttggcaaggggccactaaaatt 37393631  T
Q  131 gttattagagatgtcgaaaattctcaacttgggaaatggatgcttggtcatagaacaagtgattgtaccatgcagtttatttgatcttaaaatgagaacc 230  Q
    |||| ||||||  ||  ||||||||||||| |||||||||||||||||  ||||||| |||||||  ||||| || | |||||||| |||| | || |||    
T  37393630 gttactagagacatcataaattctcaacttaggaaatggatgcttggtgctagaacatgtgattgacccatgaagatgatttgatcgtaaacttagcacc 37393531  T
Q  231 tgtaa 235  Q
    |||||    
T  37393530 tgtaa 37393526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 66 - 221
Target Start/End: Original strand, 37710846 - 37711001
Alignment:
Q  66 tcattcacattcatcattccttgaaaattcctgatgcatgttgtcggcaagggaccactaaaattgttattagagatgtcgaaaattctcaacttgggaa 165  Q
    |||||||| ||||||||||||||||| ||| ||||||||| ||  |||||||| |||||||||||||| |||||||  || |||||||||||||||||||    
T  37710846 tcattcaccttcatcattccttgaaagttcttgatgcatgatgctggcaagggcccactaaaattgttgttagagacatcaaaaattctcaacttgggaa 37710945  T
Q  166 atggatgcttggtcatagaacaagtgattgtaccatgcagtttatttgatcttaaa 221  Q
    ||| |||||||||  ||||||| ||||||| |||||| || |||||||||| ||||    
T  37710946 atgtatgcttggtgctagaacaggtgattgcaccatgaagattatttgatcgtaaa 37711001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 66 - 235
Target Start/End: Original strand, 37702025 - 37702194
Alignment:
Q  66 tcattcacattcatcattccttgaaaattcctgatgcatgttgtcggcaagggaccactaaaattgttattagagatgtcgaaaattctcaacttgggaa 165  Q
    ||||| ||||| |||||||||||||| ||| ||||||||| ||| |||||||| |||||||||||||| ||||||   || |||||||||||||| ||||    
T  37702025 tcatttacattaatcattccttgaaagttcttgatgcatgatgttggcaaggggccactaaaattgttgttagaggcatcaaaaattctcaacttaggaa 37702124  T
Q  166 atggatgcttggtcatagaacaagtgattgtaccatgcagtttatttgatcttaaaatgagaacctgtaa 235  Q
    ||| |||||||||  ||||||||||||||| |||||| || | |||||||| |||| | || ||||||||    
T  37702125 atgaatgcttggtgctagaacaagtgattgcaccatgaagatgatttgatcgtaaactcagcacctgtaa 37702194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 251 - 338
Target Start/End: Complemental strand, 37382648 - 37382561
Alignment:
Q  251 tgaagttgttgttagagagtaaaaagtattcaatgccataaggtggaatcggaagatctccttgcaacttgttgaaactgagatcaac 338  Q
    ||||||||||||| |||||||||||||| | |||||||||| |||| || ||||||||||||||||||||||||||||||||||||||    
T  37382648 tgaagttgttgttcgagagtaaaaagtagtaaatgccataacgtgggattggaagatctccttgcaacttgttgaaactgagatcaac 37382561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 251 - 332
Target Start/End: Complemental strand, 37401185 - 37401104
Alignment:
Q  251 tgaagttgttgttagagagtaaaaagtattcaatgccataaggtggaatcggaagatctccttgcaacttgttgaaactgag 332  Q
    |||||||||| || |||||| ||||||||||||||||| |||||||||| |||||||||||||| |||||||||||||||||    
T  37401185 tgaagttgttatttgagagtgaaaagtattcaatgccagaaggtggaattggaagatctccttgtaacttgttgaaactgag 37401104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 251 - 348
Target Start/End: Original strand, 37823742 - 37823839
Alignment:
Q  251 tgaagttgttgttagagagtaaaaagtattcaatgccataaggtggaatcggaagatctccttgcaacttgttgaaactgagatcaacgtgccaaatg 348  Q
    |||||||||| || |||||| ||||||||| ||||||| |||||||||| |||||||||||||| ||||||||||||||||| ||||||  |||||||    
T  37823742 tgaagttgttatttgagagtgaaaagtattgaatgccagaaggtggaattggaagatctccttgtaacttgttgaaactgaggtcaacggaccaaatg 37823839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 251 - 329
Target Start/End: Complemental strand, 37393199 - 37393121
Alignment:
Q  251 tgaagttgttgttagagagtaaaaagtattcaatgccataaggtggaatcggaagatctccttgcaacttgttgaaact 329  Q
    ||||||||||||| ||||||||||||| ||||||||||| ||||||||| |||||||| ||||| ||||||||||||||    
T  37393199 tgaagttgttgtttgagagtaaaaagtcttcaatgccatcaggtggaattggaagatcaccttgtaacttgttgaaact 37393121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 251 - 337
Target Start/End: Original strand, 37639719 - 37639805
Alignment:
Q  251 tgaagttgttgttagagagtaaaaagtattcaatgccataaggtggaatcggaagatctccttgcaacttgttgaaactgagatcaa 337  Q
    |||||||||| || ||||||||||||||| ||||||||| ||||||||| ||||||| |||||||||| |||||||||| |||||||    
T  37639719 tgaagttgttatttgagagtaaaaagtatacaatgccatcaggtggaattggaagatgtccttgcaacatgttgaaactaagatcaa 37639805  T

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Target: chr5; HSP #18
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 251 - 332
Target Start/End: Original strand, 37696568 - 37696649
Alignment:
Q  251 tgaagttgttgttagagagtaaaaagtattcaatgccataaggtggaatcggaagatctccttgcaacttgttgaaactgag 332  Q
    ||||||||||||| |||||| |||||||| |||||| | |||||||||| |||||||||||||| |||||||||||||||||    
T  37696568 tgaagttgttgtttgagagtgaaaagtatccaatgctagaaggtggaattggaagatctccttgtaacttgttgaaactgag 37696649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 251 - 329
Target Start/End: Original strand, 37532938 - 37533016
Alignment:
Q  251 tgaagttgttgttagagagtaaaaagtattcaatgccataaggtggaatcggaagatctccttgcaacttgttgaaact 329  Q
    |||||||||| || |||||| |||||||| ||||||||| ||||||||| |||||||||||||| ||||||||||||||    
T  37532938 tgaagttgttatttgagagtgaaaagtatccaatgccatcaggtggaattggaagatctccttgtaacttgttgaaact 37533016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 251 - 329
Target Start/End: Original strand, 37594177 - 37594255
Alignment:
Q  251 tgaagttgttgttagagagtaaaaagtattcaatgccataaggtggaatcggaagatctccttgcaacttgttgaaact 329  Q
    |||||||||| || |||||| ||||||||| ||||||| |||||||||| |||||||||||||| ||||||||||||||    
T  37594177 tgaagttgttatttgagagtgaaaagtattgaatgccagaaggtggaattggaagatctccttgtaacttgttgaaact 37594255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 251 - 337
Target Start/End: Original strand, 37711477 - 37711563
Alignment:
Q  251 tgaagttgttgttagagagtaaaaagtattcaatgccataaggtggaatcggaagatctccttgcaacttgttgaaactgagatcaa 337  Q
    |||||||||| || |||||| ||||||||| ||||||| | |||||||| |||||||||||||||||| |||||||||| |||||||    
T  37711477 tgaagttgttatttgagagtgaaaagtattgaatgccagatggtggaattggaagatctccttgcaacatgttgaaactaagatcaa 37711563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 251 - 329
Target Start/End: Original strand, 37702521 - 37702599
Alignment:
Q  251 tgaagttgttgttagagagtaaaaagtattcaatgccataaggtggaatcggaagatctccttgcaacttgttgaaact 329  Q
    ||||||||||||| ||||||||||||| | ||||||||| ||||||||| ||||||| |||||||||| | ||||||||    
T  37702521 tgaagttgttgtttgagagtaaaaagtgtacaatgccatgaggtggaattggaagatgtccttgcaacattttgaaact 37702599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 252 - 337
Target Start/End: Original strand, 37435549 - 37435634
Alignment:
Q  252 gaagttgttgttagagagtaaaaagtattcaatgccataaggtggaatcggaagatctccttgcaacttgttgaaactgagatcaa 337  Q
    |||||||||||| ||||| |||||||||||||||||||  | |||||| ||||  ||||||||||| |||||||||||||| ||||    
T  37435549 gaagttgttgtttgagagcaaaaagtattcaatgccatcggatggaattggaatgtctccttgcaatttgttgaaactgaggtcaa 37435634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 251 - 324
Target Start/End: Complemental strand, 37401320 - 37401247
Alignment:
Q  251 tgaagttgttgttagagagtaaaaagtattcaatgccataaggtggaatcggaagatctccttgcaacttgttg 324  Q
    |||||||||| || |||||| ||||||||| ||||||| |||||||||| |||||||||||||| || ||||||    
T  37401320 tgaagttgttatttgagagtgaaaagtattgaatgccagaaggtggaattggaagatctccttgaaagttgttg 37401247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 251 - 324
Target Start/End: Original strand, 37639584 - 37639657
Alignment:
Q  251 tgaagttgttgttagagagtaaaaagtattcaatgccataaggtggaatcggaagatctccttgcaacttgttg 324  Q
    |||||||||| || |||||| ||||||||| ||||||| |||||||||| |||||||||||||| || ||||||    
T  37639584 tgaagttgttatttgagagtgaaaagtatttaatgccagaaggtggaattggaagatctccttgaaagttgttg 37639657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 251 - 324
Target Start/End: Original strand, 37711342 - 37711415
Alignment:
Q  251 tgaagttgttgttagagagtaaaaagtattcaatgccataaggtggaatcggaagatctccttgcaacttgttg 324  Q
    |||||||||| || |||||| ||||||||| ||||||| |||||||||| |||||||||||||| || ||||||    
T  37711342 tgaagttgttatttgagagtgaaaagtattgaatgccagaaggtggaattggaagatctccttgaaagttgttg 37711415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 293 - 335
Target Start/End: Complemental strand, 37413527 - 37413485
Alignment:
Q  293 gtggaatcggaagatctccttgcaacttgttgaaactgagatc 335  Q
    ||||||| |||||||||||||||||||||||||||||||||||    
T  37413527 gtggaattggaagatctccttgcaacttgttgaaactgagatc 37413485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 150 - 235
Target Start/End: Complemental strand, 37413899 - 37413814
Alignment:
Q  150 attctcaacttgggaaatggatgcttggtcatagaacaagtgattgtaccatgcagtttatttgatcttaaaatgagaacctgtaa 235  Q
    ||||||||||||||||||| |||||| ||  ||||||| ||||||| |||||| || |||||||||| |||| | || ||||||||    
T  37413899 attctcaacttgggaaatgtatgctttgtgctagaacaggtgattgcaccatgaagattatttgatcgtaaacttagcacctgtaa 37413814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 251 - 324
Target Start/End: Original strand, 37594042 - 37594115
Alignment:
Q  251 tgaagttgttgttagagagtaaaaagtattcaatgccataaggtggaatcggaagatctccttgcaacttgttg 324  Q
    |||| |||||||| ||||||||| ||| || |||||||| ||||||||| |||||||||||||| || ||||||    
T  37594042 tgaaattgttgtttgagagtaaatagtttttaatgccatcaggtggaattggaagatctccttgaaagttgttg 37594115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 251 - 324
Target Start/End: Original strand, 37696433 - 37696506
Alignment:
Q  251 tgaagttgttgttagagagtaaaaagtattcaatgccataaggtggaatcggaagatctccttgcaacttgttg 324  Q
    |||| |||||||| ||||||||| ||| || |||||||| ||||||||| |||||||||||||| || ||||||    
T  37696433 tgaaattgttgtttgagagtaaatagtttttaatgccatcaggtggaattggaagatctccttgaaaattgttg 37696506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 101; Significance: 5e-50; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 11 - 235
Target Start/End: Complemental strand, 16843869 - 16843645
Alignment:
Q  11 cacagaatcattatagtaattggccttacccatgtactgcaaaccaatttggctatcattcacattcatcattccttgaaaattcctgatgcatgttgtc 110  Q
    ||||||||| || ||||||||| || | |||||||| ||||||||||| |||||||||| ||||||||||||||||||||| |||  |||||||| |||     
T  16843869 cacagaatcgttgtagtaattgtccgtgcccatgtattgcaaaccaatctggctatcatccacattcatcattccttgaaagttctggatgcatgatgtt 16843770  T
Q  111 ggcaagggaccactaaaattgttattagagatgtcgaaaattctcaacttgggaaatggatgcttggtcatagaacaagtgattgtaccatgcagtttat 210  Q
    |||||||  |||||||||||||| |||||||  || |||||||||||||| |||||||||||||||||  ||||||||||||||   ||||| || ||||    
T  16843769 ggcaaggtgccactaaaattgttgttagagacatcaaaaattctcaacttaggaaatggatgcttggtgctagaacaagtgattactccatgaagattat 16843670  T
Q  211 ttgatcttaaaatgagaacctgtaa 235  Q
    | |||| ||||| ||| ||||||||    
T  16843669 tagatcgtaaaacgagtacctgtaa 16843645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 11 - 235
Target Start/End: Complemental strand, 16846536 - 16846313
Alignment:
Q  11 cacagaatcattatagtaattggccttacccatgtactgcaaaccaatttggctatcattcacattcatcattccttgaaaattcctgatgcatgttgtc 110  Q
    |||||||||||||||||||||| |||| |||||||||||||||||| |||   |||||||| | ||||||||||||||||||||| |||| |||| |||     
T  16846536 cacagaatcattatagtaattgacctttcccatgtactgcaaaccagttttattatcattcgcgttcatcattccttgaaaattcttgatacatgatgtt 16846437  T
Q  111 ggcaagggaccactaaaattgttattagagatgtcgaaaattctcaacttgggaaatggatgcttggtcatagaacaagtgattgtaccatgcagtttat 210  Q
    ||||| || ||||| || |||||||   ||||||| ||||||||||| || |||||||||||||||||  ||||||| ||||||| |||||  |||||||    
T  16846436 ggcaacggtccactgaatttgttatcgaagatgtccaaaattctcaa-tttggaaatggatgcttggtgctagaacatgtgattgaaccataaagtttat 16846338  T
Q  211 ttgatcttaaaatgagaacctgtaa 235  Q
    |||| |||||| |||| || |||||    
T  16846337 ttgaccttaaactgagtacatgtaa 16846313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 11 - 235
Target Start/End: Complemental strand, 24218604 - 24218380
Alignment:
Q  11 cacagaatcattatagtaattggccttacccatgtactgcaaaccaatttggctatcattcacattcatcattccttgaaaattcctgatgcatgttgtc 110  Q
    ||||||||||||||| |||||||||||||||||||| |||||||||  ||   |  |||||||||| |||||||||||||||||| ||| ||| | |||     
T  24218604 cacagaatcattataataattggccttacccatgtattgcaaaccagatttattgacattcacattaatcattccttgaaaattcttgaggcaagatgtt 24218505  T
Q  111 ggcaagggaccactaaaattgttattagagatgtcgaaaattctcaacttgggaaatggatgcttggtcatagaacaagtgattgtaccatgcagtttat 210  Q
    |||| ||| ||||  ||||| |||  |||||  ||| ||||||||| ||| |||||||  || |||||  ||||||||||||||  |||||| || | ||    
T  24218504 ggcacggggccacggaaattattaccagagacatcgtaaattctcatcttcggaaatgattgtttggtgctagaacaagtgattccaccatgaagatgat 24218405  T
Q  211 ttgatcttaaaatgagaacctgtaa 235  Q
    |||||| |||| |||| ||||||||    
T  24218404 ttgatcgtaaactgagtacctgtaa 24218380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 251 - 334
Target Start/End: Complemental strand, 24218053 - 24217970
Alignment:
Q  251 tgaagttgttgttagagagtaaaaagtattcaatgccataaggtggaatcggaagatctccttgcaacttgttgaaactgagat 334  Q
    ||||||||||||| |||||| ||||||||| ||| ||||| |||||||||||||| ||||||||||||||||||||||||||||    
T  24218053 tgaagttgttgtttgagagtgaaaagtattgaattccatagggtggaatcggaaggtctccttgcaacttgttgaaactgagat 24217970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 251 - 337
Target Start/End: Complemental strand, 16845982 - 16845896
Alignment:
Q  251 tgaagttgttgttagagagtaaaaagtattcaatgccataaggtggaatcggaagatctccttgcaacttgttgaaactgagatcaa 337  Q
    ||||||||||||| ||||| |||||||||| ||||||||||  |||||| ||||  ||||||||||| |||||||||||||| ||||    
T  16845982 tgaagttgttgtttgagagcaaaaagtatttaatgccataatatggaattggaatgtctccttgcaatttgttgaaactgaggtcaa 16845896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 251 - 348
Target Start/End: Complemental strand, 16843183 - 16843086
Alignment:
Q  251 tgaagttgttgttagagagtaaaaagtattcaatgccataaggtggaatcggaagatctccttgcaacttgttgaaactgagatcaacgtgccaaatg 348  Q
    ||||||||||||| |||||  ||||||||| || |||||||| |||||| ||||  ||||||||||| ||||||||||| ||||||| || |||||||    
T  16843183 tgaagttgttgtttgagagcgaaaagtattgaaggccataagatggaattggaatgtctccttgcaatttgttgaaactaagatcaatgtaccaaatg 16843086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 251 - 324
Target Start/End: Complemental strand, 16843318 - 16843245
Alignment:
Q  251 tgaagttgttgttagagagtaaaaagtattcaatgccataaggtggaatcggaagatctccttgcaacttgttg 324  Q
    |||||||||| || |||||| |||||||| ||||||||| ||||||||| |||||||||||||| || ||||||    
T  16843318 tgaagttgttatttgagagtgaaaagtatacaatgccatcaggtggaattggaagatctccttgaaaattgttg 16843245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 20 - 195
Target Start/End: Original strand, 14552668 - 14552843
Alignment:
Q  20 attatagtaattggccttacccatgtactgcaaaccaatttggctatcattcacattcatcattccttgaaaattcctgatgcatgttgtcggcaaggga 119  Q
    |||||||||  |||| ||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||| ||| ||||||||| ||| |||||||      
T  14552668 attatagtagctggctttacccatgtattgcaaaccaatttggctgtcattcacgttcatcattccttgaaagttcttgatgcatgatgttggcaaggtg 14552767  T
Q  120 ccactaaaattgttattagagatgtcgaaaattctcaacttgggaaatggatgcttggtcatagaacaagtgattg 195  Q
    |||||||||||||| |||||||  || |||||||||||||| ||||||| ||||||| |  ||||||| |||||||    
T  14552768 ccactaaaattgttgttagagacatcaaaaattctcaacttaggaaatgaatgcttgatgctagaacaggtgattg 14552843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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