View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19193_high_43 (Length: 358)
Name: NF19193_high_43
Description: NF19193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19193_high_43 |
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Alignment Details
Target: chr2 (Bit Score: 274; Significance: 1e-153; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 42 - 335
Target Start/End: Original strand, 9314069 - 9314361
Alignment:
| Q |
42 |
aatgataagttctttaccacttactcacatccttccaacaccccattcagtaacactcgtttcttttttatcaccccagcccaccattggtgatagcaaa |
141 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9314069 |
aatgataagttctttaccacttactcacatccttccaacaccccattcagtaacactcgtttcttttttatcaccccagcccaccattggtgatagcaat |
9314168 |
T |
|
| Q |
142 |
cggagaacagggacccgatgcactagccacctagtacaattactattttatagagtgcaacacaaattgttaataggattttatcaggccttatcactac |
241 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
9314169 |
cggagaacagggacccggtgcactagccacctagtacaattactattttatagagtgcaacacaaattgttaataggattttatcaggtcttatcactac |
9314268 |
T |
|
| Q |
242 |
atacaaataattacaatattattcagcacaaaatggaattgaagatactgcaatctaagtagcagaaaaaccacaaaatcaacatacacatagc |
335 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
9314269 |
atacaaataattacaatattattcagcacaaaatggaattgaagatactgcaatctaagtagcagaaaaaccac-aaatcaacatacacatagc |
9314361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 192 - 322
Target Start/End: Complemental strand, 8575900 - 8575769
Alignment:
| Q |
192 |
tagagtgcaacacaaattgttaataggattttatcaggccttatcactacatacaaataattacaatattattcagcacaaaatggaattgaagatactg |
291 |
Q |
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|||||||||||||||||||||||||||||||||||||| | |||||||||||||||| |||||||||||||||||| ||||| |||||||||||||| |
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| T |
8575900 |
tagagtgcaacacaaattgttaataggattttatcaggacctatcactacatacaaaaaattacaatattattcagaacaaacatgaattgaagatacta |
8575801 |
T |
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| Q |
292 |
caatc-taagtagcagaaaaaccacaaaatca |
322 |
Q |
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| T |
8575800 |
caatcaaaagtagcagaaaaaccagaaaatca |
8575769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 204 - 325
Target Start/End: Complemental strand, 9070216 - 9070095
Alignment:
| Q |
204 |
caaattgttaataggattttatcaggccttatcactacatacaaataattacaatattattcagcacaaaatggaattgaagatactgcaatctaagtag |
303 |
Q |
| |
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||||||||| || |||||||||||| |||||||||||| |||||||| ||||||||||||||| |||||| |||||||||||||| ||||| ||||| |
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| T |
9070216 |
caaattgttgatcggattttatcagtccttatcactacgtacaaatagttacaatattattcaacacaaacatgaattgaagatactacaatcaaagtaa |
9070117 |
T |
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| Q |
304 |
cagaaaaaccacaaaatcaaca |
325 |
Q |
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|||||||||| |||||||||| |
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| T |
9070116 |
tagaaaaaccagaaaatcaaca |
9070095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 204 - 322
Target Start/End: Complemental strand, 9063563 - 9063439
Alignment:
| Q |
204 |
caaattgttaataggattttatcaggccttatcactacata-------caaataattacaatattattcagcacaaaatggaattgaagatactgcaatc |
296 |
Q |
| |
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||||||||| ||| ||||||||| |||||||||||||||| ||||||||||||||| ||||||||||||| |||||||||| ||||||||| |
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| T |
9063563 |
caaattgttgataagattttatctagccttatcactacatagtacagacaaataattacaatagtattcagcacaaacatgaattgaagacactgcaatc |
9063464 |
T |
|
| Q |
297 |
taagtagcagaaaaaccacaaaatca |
322 |
Q |
| |
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||||||||||||||| | ||||||| |
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| T |
9063463 |
-aagtagcagaaaaactaaaaaatca |
9063439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 42 - 183
Target Start/End: Original strand, 9289587 - 9289725
Alignment:
| Q |
42 |
aatgataagttctttaccacttactcacatccttccaacaccccattcagtaacactcgtttcttttttatcaccccagcccaccattggtgatagcaaa |
141 |
Q |
| |
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|||||||| |||||| |||| | ||||||||||||||| |||||||| | |||||| ||| ||||||| ||||| |||||| ||||||||||||| |
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| T |
9289587 |
aatgataacttctttgtcactgaatcacatccttccaactccccattcggcaacacttattt---ttttatcgccccaacccacctttggtgatagcaat |
9289683 |
T |
|
| Q |
142 |
cggagaacagggacccgatgcactagccacctagtacaatta |
183 |
Q |
| |
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| |||| | | |||| |||||||||| ||||||||| |||| |
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| T |
9289684 |
ctaagaatatgaacccaatgcactagctacctagtactatta |
9289725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 277 - 322
Target Start/End: Original strand, 9289792 - 9289837
Alignment:
| Q |
277 |
gaattgaagatactgcaatctaagtagcagaaaaaccacaaaatca |
322 |
Q |
| |
|
|||||||||||| |||||||||||||||| |||||||| ||||||| |
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| T |
9289792 |
gaattgaagatattgcaatctaagtagcaaaaaaaccagaaaatca |
9289837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000008; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 204 - 244
Target Start/End: Original strand, 45218369 - 45218409
Alignment:
| Q |
204 |
caaattgttaataggattttatcaggccttatcactacata |
244 |
Q |
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||||||||| ||||||||||||||||||||||||||||||| |
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| T |
45218369 |
caaattgttgataggattttatcaggccttatcactacata |
45218409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 204 - 244
Target Start/End: Original strand, 45240866 - 45240906
Alignment:
| Q |
204 |
caaattgttaataggattttatcaggccttatcactacata |
244 |
Q |
| |
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||||||||| ||||||||| ||||||||||||||||||||| |
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| T |
45240866 |
caaattgttgataggatttaatcaggccttatcactacata |
45240906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 322
Target Start/End: Original strand, 45240912 - 45240956
Alignment:
| Q |
277 |
gaattgaagatactgcaatctaagtagcagaaaaaccacaaaatca |
322 |
Q |
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|||||||||| ||||||||| ||||||||||||||||| ||||||| |
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| T |
45240912 |
gaattgaagacactgcaatc-aagtagcagaaaaaccagaaaatca |
45240956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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