View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19193_high_45 (Length: 349)
Name: NF19193_high_45
Description: NF19193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19193_high_45 |
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| [»] scaffold0047 (2 HSPs) |
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| [»] scaffold0005 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 154; Significance: 1e-81; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 133 - 328
Target Start/End: Original strand, 348547 - 348739
Alignment:
| Q |
133 |
ctacgacgttttataaccacaacttaacacacacacatatattttccatctcttttcttcatttgacactttcatttacgttgatctaagatcatatctt |
232 |
Q |
| |
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|||| |||||||||||||||||||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
348547 |
ctacaacgttttataaccacaacttaacacacacatatattttt---atctcttttcttcatttgacactttcatttacgttgatttaagatcatatctt |
348643 |
T |
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| Q |
233 |
gcatattcaagtcatgcagcaatgtcaacaagataagtggtacattttctacatttttcaccaccatatttatttggtctttatagtaaacttaaa |
328 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
348644 |
gcatattcaagttctgcagcaatgtcaacaagataagtggtacattttctacatttttcaccaccatatttatttggtctttgtagtaaacttaaa |
348739 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0047 (Bit Score: 97; Significance: 1e-47; HSPs: 2)
Name: scaffold0047
Description:
Target: scaffold0047; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 133 - 326
Target Start/End: Complemental strand, 25354 - 25166
Alignment:
| Q |
133 |
ctacgacgttttataaccacaacttaacacacacacatatattttccatctcttttcttcatttgacactttcatttacgttgatctaagatcatatctt |
232 |
Q |
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|||| ||||||||||||||| |||||||| ||| ||||||||| |||||||| || || |||||||||||||| || |||||||||||||||||||| |
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| T |
25354 |
ctacaacgttttataaccactacttaacagaca----tatattttc-atctctttcctccacttgacactttcattcacattgatctaagatcatatctt |
25260 |
T |
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| Q |
233 |
gcatattcaagtcatgcagcaatgtcaacaagataagtggtacattttctacatttttcaccaccatatttatttggtctttatagtaaactta |
326 |
Q |
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|||||||||| |||||||||||||| |||||||||| | |||||||||||||||| ||||||||||||||||| ||||| ||||||||||| |
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| T |
25259 |
atatattcaagttgtgcagcaatgtcaataagataagtgctgcattttctacattttttaccaccatatttatttgatctttgtagtaaactta |
25166 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0047; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 16 - 100
Target Start/End: Complemental strand, 25472 - 25388
Alignment:
| Q |
16 |
aaaatccaattacttacgatgtgatcaatgtacatgttccttaatattcttgcaaatgtaacctatgcacaaaaaattaaatagt |
100 |
Q |
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||||| ||||||||||| ||||||||||||||||||| ||||||||||||||||||| ||| |||||| | |||| |||||||| |
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| T |
25472 |
aaaattcaattacttacaatgtgatcaatgtacatgtcccttaatattcttgcaaatttaaactatgcttacaaaaataaatagt |
25388 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0005 (Bit Score: 97; Significance: 1e-47; HSPs: 2)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 133 - 326
Target Start/End: Original strand, 11166 - 11354
Alignment:
| Q |
133 |
ctacgacgttttataaccacaacttaacacacacacatatattttccatctcttttcttcatttgacactttcatttacgttgatctaagatcatatctt |
232 |
Q |
| |
|
|||| ||||||||||||||| |||||||| ||| ||||||||| |||||||| || || |||||||||||||| || |||||||||||||||||||| |
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| T |
11166 |
ctacaacgttttataaccactacttaacagaca----tatattttc-atctctttcctccacttgacactttcattcacattgatctaagatcatatctt |
11260 |
T |
|
| Q |
233 |
gcatattcaagtcatgcagcaatgtcaacaagataagtggtacattttctacatttttcaccaccatatttatttggtctttatagtaaactta |
326 |
Q |
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|||||||||| |||||||||||||| |||||||||| | |||||||||||||||| ||||||||||||||||| ||||| ||||||||||| |
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| T |
11261 |
atatattcaagttgtgcagcaatgtcaataagataagtgctgcattttctacattttttaccaccatatttatttgatctttgtagtaaactta |
11354 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0005; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 16 - 100
Target Start/End: Original strand, 11048 - 11132
Alignment:
| Q |
16 |
aaaatccaattacttacgatgtgatcaatgtacatgttccttaatattcttgcaaatgtaacctatgcacaaaaaattaaatagt |
100 |
Q |
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||||| ||||||||||| ||||||||||||||||||| ||||||||||||||||||| ||| |||||| | |||| |||||||| |
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| T |
11048 |
aaaattcaattacttacaatgtgatcaatgtacatgtcccttaatattcttgcaaatttaaactatgcttacaaaaataaatagt |
11132 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 97; Significance: 1e-47; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 133 - 326
Target Start/End: Complemental strand, 14828543 - 14828355
Alignment:
| Q |
133 |
ctacgacgttttataaccacaacttaacacacacacatatattttccatctcttttcttcatttgacactttcatttacgttgatctaagatcatatctt |
232 |
Q |
| |
|
|||| ||||||||||||||| |||||||| ||| ||||||||| |||||||| || || |||||||||||||| || |||||||||||||||||||| |
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| T |
14828543 |
ctacaacgttttataaccactacttaacagaca----tatattttc-atctctttcctccacttgacactttcattcacattgatctaagatcatatctt |
14828449 |
T |
|
| Q |
233 |
gcatattcaagtcatgcagcaatgtcaacaagataagtggtacattttctacatttttcaccaccatatttatttggtctttatagtaaactta |
326 |
Q |
| |
|
|||||||||| |||||||||||||| |||||||||| | |||||||||||||||| ||||||||||||||||| ||||| ||||||||||| |
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| T |
14828448 |
atatattcaagttgtgcagcaatgtcaataagataagtgctgcattttctacattttttaccaccatatttatttgatctttgtagtaaactta |
14828355 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 16 - 100
Target Start/End: Complemental strand, 14828661 - 14828577
Alignment:
| Q |
16 |
aaaatccaattacttacgatgtgatcaatgtacatgttccttaatattcttgcaaatgtaacctatgcacaaaaaattaaatagt |
100 |
Q |
| |
|
||||| ||||||||||| ||||||||||||||||||| ||||||||||||||||||| ||| |||||| | |||| |||||||| |
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|
| T |
14828661 |
aaaattcaattacttacaatgtgatcaatgtacatgtcccttaatattcttgcaaatttaaactatgcttacaaaaataaatagt |
14828577 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 140 - 290
Target Start/End: Original strand, 42125336 - 42125481
Alignment:
| Q |
140 |
gttttataaccacaacttaacacacacacatatattttccatctcttttcttcatttgacactttcatttacgttgatctaagatcatatcttgcatatt |
239 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| ||||||| || |||||| |||| |||||| ||||||| |
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|
| T |
42125336 |
gttttataaccacaacttaacacacaca----tattttc-atctcttttcttcatttgacagtttcattcacactgatctgagattatatctagcatatt |
42125430 |
T |
|
| Q |
240 |
caagtcatgcagcaatgtcaacaagataagtggtacattttctacattttt |
290 |
Q |
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||||| | |||||||||||||||||||||||||| | ||||||||||||| |
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|
| T |
42125431 |
caagtagtacagcaatgtcaacaagataagtggtataatttctacattttt |
42125481 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 221 - 283
Target Start/End: Complemental strand, 20352801 - 20352739
Alignment:
| Q |
221 |
agatcatatcttgcatattcaagtcatgcagcaatgtcaacaagataagtggtacattttcta |
283 |
Q |
| |
|
||||||||| ||||||||| |||| |||| |||||||||||||||||||||| |||||||||| |
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|
| T |
20352801 |
agatcatatattgcatatttaagttatgcggcaatgtcaacaagataagtggaacattttcta |
20352739 |
T |
|
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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 237 - 283
Target Start/End: Complemental strand, 30087836 - 30087790
Alignment:
| Q |
237 |
attcaagtcatgcagcaatgtcaacaagataagtggtacattttcta |
283 |
Q |
| |
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|||||||| |||| |||||||||||||||||||||| |||||||||| |
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| T |
30087836 |
attcaagttatgcggcaatgtcaacaagataagtggaacattttcta |
30087790 |
T |
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