View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19193_high_50 (Length: 333)
Name: NF19193_high_50
Description: NF19193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19193_high_50 |
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Alignment Details
Target: chr7 (Bit Score: 201; Significance: 1e-109; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 17 - 262
Target Start/End: Original strand, 33942465 - 33942719
Alignment:
| Q |
17 |
aatacttcctcttcatactccatctgcaaagtctatcattaaaagattgattatggcaagata----------tgtaatcctcaccatatgactaagccg |
106 |
Q |
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| T |
33942465 |
aatactttctcttc-tactccatctgcaaagtctatcattaaaagattgattatggcaagatatgtaatgatatgtaatcctcgccatatgactaagccg |
33942563 |
T |
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| Q |
107 |
ctccttctctctctccaacctcaacaccaaaaataaacaaatgaaagtgagctttacatatatagacttagctagggttttgcttggaagttaagaaaag |
206 |
Q |
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| T |
33942564 |
ctccttctctctctccaacctcaacaccaaaaataaacaaatgaaagtgagctttacatatctagacttagctagggttttgcttggaagttaagaaaag |
33942663 |
T |
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| Q |
207 |
tgaaaagacgcataaacctagaaattgaaagttaccttaatttataaagggatttt |
262 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33942664 |
tgaaaagacgcataaacctagaaattgaaagttaccttaatttataaagggatttt |
33942719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 262
Target Start/End: Original strand, 33934466 - 33934538
Alignment:
| Q |
190 |
ttggaagttaagaaaagtgaaaagacgcataaacctagaaatt-gaaagttaccttaatttataaagggatttt |
262 |
Q |
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||||||||||| |||| |||||| ||| |||||| |||| || ||||||||||||||||||||||| |||||| |
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| T |
33934466 |
ttggaagttaaaaaaactgaaaa-acgattaaaccaagaattttgaaagttaccttaatttataaagagatttt |
33934538 |
T |
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