View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19193_high_59 (Length: 308)

Name: NF19193_high_59
Description: NF19193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19193_high_59
NF19193_high_59
[»] scaffold1064 (2 HSPs)
scaffold1064 (121-304)||(1556-1739)
scaffold1064 (14-122)||(1313-1421)
[»] chr4 (9 HSPs)
chr4 (121-298)||(9237555-9237732)
chr4 (121-294)||(9258880-9259053)
chr4 (14-122)||(9237314-9237422)
chr4 (136-291)||(9173252-9173408)
chr4 (193-294)||(9166006-9166107)
chr4 (121-200)||(9166127-9166206)
chr4 (193-272)||(9239060-9239139)
chr4 (136-245)||(9133389-9133493)
chr4 (205-294)||(9180829-9180918)


Alignment Details
Target: scaffold1064 (Bit Score: 180; Significance: 3e-97; HSPs: 2)
Name: scaffold1064
Description:

Target: scaffold1064; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 121 - 304
Target Start/End: Original strand, 1556 - 1739
Alignment:
Q  121 aatgtatttcgaaaatgaaatgcataattctccatgttttcttagtttatatattgatttatattactatgctggcctttgaacatgatcttgttgtaat 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1556 aatgtatttcgaaaatgaaatgcataattctccatgttttcttagtttatatattgatttatattactatgctggcctttgaacatgatcttgttgtaat 1655  T
Q  221 acattaattttcttttctatttaagcaagttatttgggaatgtcacccatataagctgattgaagttgatagattcatctcact 304  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  1656 acattaattttcttttctatttaagcaagttatttgggaatgtcacccatataagctgattgaagttgatagattcatgtcact 1739  T

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Target: scaffold1064; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 14 - 122
Target Start/End: Original strand, 1313 - 1421
Alignment:
Q  14 cctatgttgtatgtctcagatctctgtctatttaagatcattgctagtgagagggccatcaaagttccaggtattctaatacttattattaatatatttg 113  Q
    |||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1313 cctatgttgtatgtttcagatctctgtctatttaagatcattgctggtgagagggccatcaaagttccaggtattctaatacttattattaatatatttg 1412  T
Q  114 attaatcaa 122  Q
    |||||||||    
T  1413 attaatcaa 1421  T

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Target: chr4 (Bit Score: 174; Significance: 1e-93; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 121 - 298
Target Start/End: Original strand, 9237555 - 9237732
Alignment:
Q  121 aatgtatttcgaaaatgaaatgcataattctccatgttttcttagtttatatattgatttatattactatgctggcctttgaacatgatcttgttgtaat 220  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  9237555 aatgtatttcgaaaatgaaatgcataattctccatgttttcttagtttatatattgatttatattactatgctggcctttgaacatgatcttgttgaaat 9237654  T
Q  221 acattaattttcttttctatttaagcaagttatttgggaatgtcacccatataagctgattgaagttgatagattcat 298  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9237655 acattaattttcttttctatttaagcaagttatttgggaatgtcacccatataagctgattgaagttgatagattcat 9237732  T

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Target: chr4; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 121 - 294
Target Start/End: Original strand, 9258880 - 9259053
Alignment:
Q  121 aatgtatttcgaaaatgaaatgcataattctccatgttttcttagtttatatattgatttatattactatgctggcctttgaacatgatcttgttgtaat 220  Q
    |||||||||  ||| |||||||||||||| |||| ||||||||| |||||||||||||||||||||||||  ||||||||||  ||||||||||||||||    
T  9258880 aatgtattttaaaattgaaatgcataattttccaagttttcttaatttatatattgatttatattactatattggcctttgataatgatcttgttgtaat 9258979  T
Q  221 acattaattttcttttctatttaagcaagttatttgggaatgtcacccatataagctgattgaagttgatagat 294  Q
    ||||||||||||||||| ||||||||| ||| ||| ||| |||| ||||||||||||||||| |||||||||||    
T  9258980 acattaattttcttttcaatttaagcatgttctttaggagtgtcccccatataagctgattgcagttgatagat 9259053  T

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Target: chr4; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 14 - 122
Target Start/End: Original strand, 9237314 - 9237422
Alignment:
Q  14 cctatgttgtatgtctcagatctctgtctatttaagatcattgctagtgagagggccatcaaagttccaggtattctaatacttattattaatatatttg 113  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||    
T  9237314 cctatgttgtatgtttcagatctctgtctatttaagatcattgctagtgagagggccatcaaagttccaggtattataatacttattattaatatacttg 9237413  T
Q  114 attaatcaa 122  Q
    || ||||||    
T  9237414 ataaatcaa 9237422  T

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Target: chr4; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 136 - 291
Target Start/End: Original strand, 9173252 - 9173408
Alignment:
Q  136 tgaaatgcataattctccatgttttcttagtttatatattgatttatattactatgctggcctttgaacatgatcttgttgtaatacattaattttcttt 235  Q
    ||||| |||||| | |||| |||||||||||||||||| ||||||||||||||||  |  |||||||  |||||||| ||||||||||||||||||||||    
T  9173252 tgaaaagcataagtttccaagttttcttagtttatatactgatttatattactatatttccctttgataatgatcttattgtaatacattaattttcttt 9173351  T
Q  236 tctatttaagcaagttatttgggaatgtcacccatat-aagctgattgaagttgata 291  Q
    || ||||||||| ||| | | |||||||| ||||| | |||||||||||||||||||    
T  9173352 tcaatttaagcatgttctctaggaatgtcccccatttaaagctgattgaagttgata 9173408  T

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Target: chr4; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 193 - 294
Target Start/End: Complemental strand, 9166107 - 9166006
Alignment:
Q  193 tggcctttgaacatgatcttgttgtaatacattaattttcttttctatttaagcaagttatttgggaatgtcacccatataagctgattgaagttgatag 292  Q
    ||||||||||  |||||||||||| |||||||||||||||||||| ||||||||| ||| ||| |||| ||| |||||||||||||||||||||||||||    
T  9166107 tggcctttgataatgatcttgttgcaatacattaattttcttttcaatttaagcatgttctttaggaacgtctcccatataagctgattgaagttgatag 9166008  T
Q  293 at 294  Q
    ||    
T  9166007 at 9166006  T

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Target: chr4; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 121 - 200
Target Start/End: Complemental strand, 9166206 - 9166127
Alignment:
Q  121 aatgtatttcgaaaatgaaatgcataattctccatgttttcttagtttatatattgatttatattactatgctggccttt 200  Q
    |||||||||  ||| |||||||||||||| |||| |||||||||||||||||| ||||||||| ||||||  ||||||||    
T  9166206 aatgtattttaaaattgaaatgcataattttccaagttttcttagtttatatactgatttatagtactatattggccttt 9166127  T

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Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 193 - 272
Target Start/End: Original strand, 9239060 - 9239139
Alignment:
Q  193 tggcctttgaacatgatcttgttgtaatacattaattttcttttctatttaagcaagttatttgggaatgtcacccatat 272  Q
    ||||||||||  ||||| ||||||||||||||| | |||||||||  ||||||||  || |||||||||||| |||||||    
T  9239060 tggcctttgataatgatgttgttgtaatacattgagtttcttttcagtttaagcatattctttgggaatgtcccccatat 9239139  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 245
Target Start/End: Complemental strand, 9133493 - 9133389
Alignment:
Q  136 tgaaatgcataattctccatgttttcttagtttatatattgatttatattactatgctggcctttgaacatgatcttgttgtaatacattaattttcttt 235  Q
    ||||||||| |||| | || ||||| | ||||||| || |||||||||||||||  |||| ||||||  |||||||||     ||||||| |||||||||    
T  9133493 tgaaatgcacaatttttcaagttttatgagtttatgtactgatttatattactaaactggtctttgataatgatcttg-----atacattgattttcttt 9133399  T
Q  236 tctatttaag 245  Q
    || |||||||    
T  9133398 tcaatttaag 9133389  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 294
Target Start/End: Original strand, 9180829 - 9180918
Alignment:
Q  205 atgatcttgttgtaatacattaattttcttttctatttaagcaagttatttgggaatgtcacccatataagctgattgaagttgatagat 294  Q
    ||||| |||||||||| |||| | ||||||||   |||||||| ||| ||||||||| || ||||||||| | || | ||||||||||||    
T  9180829 atgatgttgttgtaatccattgactttcttttgggtttaagcatgttctttgggaatatctcccatataatccgactaaagttgatagat 9180918  T

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