View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19193_high_64 (Length: 296)
Name: NF19193_high_64
Description: NF19193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19193_high_64 |
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Alignment Details
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 13 - 264
Target Start/End: Original strand, 5395838 - 5396082
Alignment:
| Q |
13 |
gaacaaatcaataacaagctcacttggcaaaatagatatataacatttaaggaaaatgctaaatatagcgaatgaaaattagtgaaaatatgcgaaggag |
112 |
Q |
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| T |
5395838 |
gaacaaatcaataacaagctcacttggcaaaatagatatataacatttaaggaaaatgctaaatatagcgaatgaaaattagtgaaaatatgcgaaggag |
5395937 |
T |
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| Q |
113 |
tcacagccgttgatcaaaactagtactaagctattaaattaatagtatttctcactcaaagtgtgaaccaagtaactgtaaattatatgaaaattgaaaa |
212 |
Q |
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| T |
5395938 |
tcacagccgttgatcaaaactagtactaagctattaaattaatagtatttcccactcaaagtgtgaaccaagtaactgtaaattata-------tgaaaa |
5396030 |
T |
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| Q |
213 |
ttgtggaaaagtaagaactcataattaaaaattgagcttaacctcctcactt |
264 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| || |||||| |
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| T |
5396031 |
ttgtggaaaagtaagaactcataattaaaaattgagcttaacttcttcactt |
5396082 |
T |
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