View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19193_high_7 (Length: 573)
Name: NF19193_high_7
Description: NF19193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19193_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 523; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 523; E-Value: 0
Query Start/End: Original strand, 21 - 563
Target Start/End: Complemental strand, 38967106 - 38966564
Alignment:
| Q |
21 |
ccagtcatatcataacaaacgaactggccaagtccaacggagaagcgacttgtccatttataagtaaattatgagtcatacccaacaatttcacagacta |
120 |
Q |
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| T |
38967106 |
ccagtcatatcgtaacaaacgaactggccaagtccaacggagaagcgacttgtccatttataagtaaattatgagtcatacccaacaatttcacagacta |
38967007 |
T |
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| Q |
121 |
aattgatattcaatcaaagaaaaatataaggggaaactaccaaacctgacagcatcaccagttggagcaccaaagttaattcttgcagctactttcaaga |
220 |
Q |
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| T |
38967006 |
aattgatattcaatcaaagaaaaatataaggggaaactaccaaacctgacagcatcaccagttggagcaccaaagttaattcttgcagctactttcaaga |
38966907 |
T |
|
| Q |
221 |
agaaatcatcctcaaaatcagtggcatacatagaaagattcaagggtctaagctcaatagtagatatgaaaggagaaccagttgtagcacaacagatgca |
320 |
Q |
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| T |
38966906 |
agaaatcatcctcaaaatcagtggcatacatagaaagattcaagggtctaagctcaatagtagatatgaaaggagaaccagttgtagcacaacagatgca |
38966807 |
T |
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| Q |
321 |
aacatcaacagaatttgaaggtgccctaaagatcatttccttaacatatattcttgactcatcataaattgacacagtagcccatttagttgcatccaag |
420 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38966806 |
aacatcaacagaatttgaaggtgctctaaagatcatttccttaacatatattcttgactcatcataaattgacacagtagcccatttagttgcatccaag |
38966707 |
T |
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| Q |
421 |
taaagttgaaactgagggtatgtgtctccattttgcaaacttccatactgaaaagtagctcttaccaaataccttcttctctcttcaatctcaagtgtat |
520 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
38966706 |
taaagttgaaactgagggtatgtgtctccattttgcaaacttccatactgaaaagtagctcttaccaaataccttcttctctcttcagcctcaagtgtat |
38966607 |
T |
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| Q |
521 |
aacaatattttctgctatctgttggaaaatctctgcgtctctg |
563 |
Q |
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| T |
38966606 |
aacaatattttctgctatctgttggaaaatctctgcgtttctg |
38966564 |
T |
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