View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19193_high_74 (Length: 262)

Name: NF19193_high_74
Description: NF19193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19193_high_74
NF19193_high_74
[»] chr2 (4 HSPs)
chr2 (140-230)||(37269226-37269316)
chr2 (157-230)||(37272269-37272342)
chr2 (181-230)||(24345200-24345249)
chr2 (175-230)||(41618823-41618878)
[»] chr8 (9 HSPs)
chr8 (48-125)||(12633917-12633994)
chr8 (141-230)||(37291243-37291332)
chr8 (143-230)||(6201316-6201403)
chr8 (143-230)||(34757692-34757779)
chr8 (157-230)||(6204008-6204081)
chr8 (157-230)||(29632321-29632394)
chr8 (157-230)||(34760080-34760153)
chr8 (157-230)||(37293934-37294007)
chr8 (157-230)||(26990336-26990409)
[»] chr4 (14 HSPs)
chr4 (143-230)||(6634945-6635032)
chr4 (141-229)||(15684434-15684522)
chr4 (143-230)||(46002954-46003041)
chr4 (144-230)||(48314261-48314347)
chr4 (141-230)||(43324279-43324368)
chr4 (144-230)||(33236415-33236501)
chr4 (157-230)||(6632287-6632360)
chr4 (157-230)||(15673034-15673107)
chr4 (157-230)||(33242986-33243059)
chr4 (157-230)||(43325863-43325936)
chr4 (157-230)||(31134541-31134614)
chr4 (170-230)||(1244501-1244561)
chr4 (157-230)||(46000291-46000364)
chr4 (170-230)||(31112855-31112915)
[»] chr7 (4 HSPs)
chr7 (141-230)||(10275870-10275959)
chr7 (157-230)||(10278556-10278629)
chr7 (181-230)||(15694238-15694287)
chr7 (181-230)||(15701218-15701267)
[»] chr1 (3 HSPs)
chr1 (142-230)||(32726260-32726348)
chr1 (157-230)||(32729216-32729289)
chr1 (157-230)||(10487291-10487364)
[»] chr3 (5 HSPs)
chr3 (147-230)||(10310073-10310156)
chr3 (143-222)||(34278895-34278974)
chr3 (157-230)||(10316100-10316173)
chr3 (157-230)||(25603637-25603710)
chr3 (175-230)||(25609130-25609185)
[»] chr6 (3 HSPs)
chr6 (141-230)||(29623992-29624081)
chr6 (57-123)||(34007754-34007820)
chr6 (157-230)||(29629731-29629804)
[»] scaffold0785 (1 HSPs)
scaffold0785 (143-230)||(2284-2371)
[»] chr5 (5 HSPs)
chr5 (143-230)||(12031770-12031857)
chr5 (150-230)||(22057722-22057802)
chr5 (157-230)||(7486231-7486304)
chr5 (157-227)||(22051425-22051495)
chr5 (157-230)||(18528967-18529040)
[»] scaffold0025 (1 HSPs)
scaffold0025 (180-230)||(11090-11140)
[»] scaffold0820 (1 HSPs)
scaffold0820 (175-230)||(5272-5327)


Alignment Details
Target: chr2 (Bit Score: 79; Significance: 5e-37; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 140 - 230
Target Start/End: Original strand, 37269226 - 37269316
Alignment:
Q  140 caagggaaattctttgttacccatctcaccatggcgggtatttgtactcatgacattttaagtcggttaaaatgttaactgacgtcataag 230  Q
    ||||||||||||||||||||||||||||| |||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  37269226 caagggaaattctttgttacccatctcactatggtgggtatttgtacccatgacattttaagtcggttaaaatgttaactgacgtcataag 37269316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 157 - 230
Target Start/End: Complemental strand, 37272342 - 37272269
Alignment:
Q  157 tacccatctcaccatggcgggtatttgtactcatgacattttaagtcggttaaaatgttaactgacgtcataag 230  Q
    |||||||||| | |||| |||||||||||| |||||| ||||||||||||||||||||||||||||||||||||    
T  37272342 tacccatctcgctatggtgggtatttgtacccatgaccttttaagtcggttaaaatgttaactgacgtcataag 37272269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 181 - 230
Target Start/End: Complemental strand, 24345249 - 24345200
Alignment:
Q  181 ttgtactcatgacattttaagtcggttaaaatgttaactgacgtcataag 230  Q
    |||||| |||||| |||||||||||||||||||||||| |||||||||||    
T  24345249 ttgtacccatgaccttttaagtcggttaaaatgttaacagacgtcataag 24345200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 175 - 230
Target Start/End: Complemental strand, 41618878 - 41618823
Alignment:
Q  175 gggtatttgtactcatgacattttaagtcggttaaaatgttaactgacgtcataag 230  Q
    |||||||||||| |||||| ||||||||||||||||| || |||||| ||||||||    
T  41618878 gggtatttgtacccatgaccttttaagtcggttaaaaggtcaactgatgtcataag 41618823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 78; Significance: 2e-36; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 48 - 125
Target Start/End: Complemental strand, 12633994 - 12633917
Alignment:
Q  48 gaaaggcatatactaggatgattttcatttcaatattgtatttttatcaagttcttttgtgaaataccaatcatacaa 125  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12633994 gaaaggcatatactaggatgattttcatttcaatattgtatttttatcaagttcttttgtgaaataccaatcatacaa 12633917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 141 - 230
Target Start/End: Original strand, 37291243 - 37291332
Alignment:
Q  141 aagggaaattctttgttacccatctcaccatggcgggtatttgtactcatgacattttaagtcggttaaaatgttaactgacgtcataag 230  Q
    |||||||||||||||||||||||||||| |||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  37291243 aagggaaattctttgttacccatctcactatggtgggtatttgtacccatgacattttaagtcggttaaaatgttaactgacgtcataag 37291332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 143 - 230
Target Start/End: Original strand, 6201316 - 6201403
Alignment:
Q  143 gggaaattctttgttacccatctcaccatggcgggtatttgtactcatgacattttaagtcggttaaaatgttaactgacgtcataag 230  Q
    |||||||||||||||||||||||||| |||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  6201316 gggaaattctttgttacccatctcactatggtgggtatttgtacccatgacattttaagtcggttaaaatgttaactgacgtcataag 6201403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 143 - 230
Target Start/End: Original strand, 34757692 - 34757779
Alignment:
Q  143 gggaaattctttgttacccatctcaccatggcgggtatttgtactcatgacattttaagtcggttaaaatgttaactgacgtcataag 230  Q
    |||||||||||||||||||||||||| |||| |||||||||||| ||||||||||||||||||||||||||| |||||||||||||||    
T  34757692 gggaaattctttgttacccatctcactatggtgggtatttgtacccatgacattttaagtcggttaaaatgtcaactgacgtcataag 34757779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 157 - 230
Target Start/End: Complemental strand, 6204081 - 6204008
Alignment:
Q  157 tacccatctcaccatggcgggtatttgtactcatgacattttaagtcggttaaaatgttaactgacgtcataag 230  Q
    |||||||||| | |||| |||||||||||| |||||| ||||||||||||||||||||||||||||||||||||    
T  6204081 tacccatctcgctatggtgggtatttgtacccatgaccttttaagtcggttaaaatgttaactgacgtcataag 6204008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 157 - 230
Target Start/End: Complemental strand, 29632394 - 29632321
Alignment:
Q  157 tacccatctcaccatggcgggtatttgtactcatgacattttaagtcggttaaaatgttaactgacgtcataag 230  Q
    |||||||||| | |||| |||||||||||| |||||| ||||||||||||||||||||||||||||||||||||    
T  29632394 tacccatctcgctatggtgggtatttgtacccatgaccttttaagtcggttaaaatgttaactgacgtcataag 29632321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 157 - 230
Target Start/End: Complemental strand, 34760153 - 34760080
Alignment:
Q  157 tacccatctcaccatggcgggtatttgtactcatgacattttaagtcggttaaaatgttaactgacgtcataag 230  Q
    |||||||||| | |||| |||||||||||| |||||| ||||||||||||||||||||||||||||||||||||    
T  34760153 tacccatctcgctatggtgggtatttgtacccatgaccttttaagtcggttaaaatgttaactgacgtcataag 34760080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 157 - 230
Target Start/End: Complemental strand, 37294007 - 37293934
Alignment:
Q  157 tacccatctcaccatggcgggtatttgtactcatgacattttaagtcggttaaaatgttaactgacgtcataag 230  Q
    |||||||||| | |||| |||||||||||| |||||| ||||||||||| ||||||||||||||||||||||||    
T  37294007 tacccatctcgctatggtgggtatttgtacccatgaccttttaagtcggataaaatgttaactgacgtcataag 37293934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 157 - 230
Target Start/End: Complemental strand, 26990409 - 26990336
Alignment:
Q  157 tacccatctcaccatggcgggtatttgtactcatgacattttaagtcggttaaaatgttaactgacgtcataag 230  Q
    ||||||||| || |||| |||||||| ||| |||||| |||||||||||||||||||||||| |||| ||||||    
T  26990409 tacccatcttactatggtgggtatttatacccatgaccttttaagtcggttaaaatgttaacagacggcataag 26990336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 76; Significance: 3e-35; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 143 - 230
Target Start/End: Complemental strand, 6635032 - 6634945
Alignment:
Q  143 gggaaattctttgttacccatctcaccatggcgggtatttgtactcatgacattttaagtcggttaaaatgttaactgacgtcataag 230  Q
    |||||||||||||||||||||||||| |||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  6635032 gggaaattctttgttacccatctcactatggtgggtatttgtacccatgacattttaagtcggttaaaatgttaactgacgtcataag 6634945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 141 - 229
Target Start/End: Complemental strand, 15684522 - 15684434
Alignment:
Q  141 aagggaaattctttgttacccatctcaccatggcgggtatttgtactcatgacattttaagtcggttaaaatgttaactgacgtcataa 229  Q
    |||||||||||||||||||||||||||| |||| |||||||||||| |||||||||||||||||| |||||||||||||||||||||||    
T  15684522 aagggaaattctttgttacccatctcactatggtgggtatttgtacccatgacattttaagtcggataaaatgttaactgacgtcataa 15684434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 143 - 230
Target Start/End: Complemental strand, 46003041 - 46002954
Alignment:
Q  143 gggaaattctttgttacccatctcaccatggcgggtatttgtactcatgacattttaagtcggttaaaatgttaactgacgtcataag 230  Q
    |||||||||||||||||||||||||  |||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  46003041 gggaaattctttgttacccatctcaatatggtgggtatttgtacccatgacattttaagtcggttaaaatgttaactgacgtcataag 46002954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 144 - 230
Target Start/End: Complemental strand, 48314347 - 48314261
Alignment:
Q  144 ggaaattctttgttacccatctcaccatggcgggtatttgtactcatgacattttaagtcggttaaaatgttaactgacgtcataag 230  Q
    ||||||||||||||||||||||||| |||| |||||||||||| ||||||||||||||| |||||||||||||||||||||||||||    
T  48314347 ggaaattctttgttacccatctcactatggtgggtatttgtacccatgacattttaagttggttaaaatgttaactgacgtcataag 48314261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 141 - 230
Target Start/End: Original strand, 43324279 - 43324368
Alignment:
Q  141 aagggaaattctttgttacccatctcaccatggcgggtatttgtactcatgacattttaagtcggttaaaatgttaactgacgtcataag 230  Q
    |||| ||||||||||||||||||||  | |||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  43324279 aaggaaaattctttgttacccatctttctatggtgggtatttgtacccatgacattttaagtcggttaaaatgttaactgacgtcataag 43324368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 144 - 230
Target Start/End: Original strand, 33236415 - 33236501
Alignment:
Q  144 ggaaattctttgttacccatctcaccatggcgggtatttgtactcatgacattttaagtcggttaaaatgttaactgacgtcataag 230  Q
    ||||||||||||||||||||||| | |||| ||||||| |||| |||||| |||||| ||||||||||||||||| |||||||||||    
T  33236415 ggaaattctttgttacccatctcgctatggtgggtattggtacccatgaccttttaactcggttaaaatgttaacagacgtcataag 33236501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 157 - 230
Target Start/End: Original strand, 6632287 - 6632360
Alignment:
Q  157 tacccatctcaccatggcgggtatttgtactcatgacattttaagtcggttaaaatgttaactgacgtcataag 230  Q
    |||||||||| | |||| |||||||||||| |||||| ||||||||||| ||||||||||||||||||||||||    
T  6632287 tacccatctcgctatggtgggtatttgtacccatgaccttttaagtcggctaaaatgttaactgacgtcataag 6632360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 157 - 230
Target Start/End: Original strand, 15673034 - 15673107
Alignment:
Q  157 tacccatctcaccatggcgggtatttgtactcatgacattttaagtcggttaaaatgttaactgacgtcataag 230  Q
    |||||||||||| |||| ||||||||||||  ||||| |||| |||||||||||||||||||||||||||||||    
T  15673034 tacccatctcactatggtgggtatttgtacctatgaccttttgagtcggttaaaatgttaactgacgtcataag 15673107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 157 - 230
Target Start/End: Complemental strand, 33243059 - 33242986
Alignment:
Q  157 tacccatctcaccatggcgggtatttgtactcatgacattttaagtcggttaaaatgttaactgacgtcataag 230  Q
    |||||||| ||| || | |||||||||||| |||||| ||||||||||||||||||||||||||||||||||||    
T  33243059 tacccatcccactatagtgggtatttgtacccatgaccttttaagtcggttaaaatgttaactgacgtcataag 33242986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 157 - 230
Target Start/End: Complemental strand, 43325936 - 43325863
Alignment:
Q  157 tacccatctcaccatggcgggtatttgtactcatgacattttaagtcggttaaaatgttaactgacgtcataag 230  Q
    |||||||||||| | || |||||||||||| |||||| |||||||||||||||||||||||| |||||||||||    
T  43325936 tacccatctcactaaggtgggtatttgtacccatgaccttttaagtcggttaaaatgttaaccgacgtcataag 43325863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 157 - 230
Target Start/End: Complemental strand, 31134614 - 31134541
Alignment:
Q  157 tacccatctcaccatggcgggtatttgtactcatgacattttaagtcggttaaaatgttaactgacgtcataag 230  Q
    ||||||||| || |||  |||||||||||| |||||| |||||||||||||||||||||| |||||||||||||    
T  31134614 tacccatcttactatgatgggtatttgtacccatgaccttttaagtcggttaaaatgttagctgacgtcataag 31134541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 170 - 230
Target Start/End: Original strand, 1244501 - 1244561
Alignment:
Q  170 atggcgggtatttgtactcatgacattttaagtcggttaaaatgttaactgacgtcataag 230  Q
    |||| |||||||||||| |||||| |||||||||||||||||||||||||||||| |||||    
T  1244501 atggtgggtatttgtacccatgaccttttaagtcggttaaaatgttaactgacgtgataag 1244561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 157 - 230
Target Start/End: Original strand, 46000291 - 46000364
Alignment:
Q  157 tacccatctcaccatggcgggtatttgtactcatgacattttaagtcggttaaaatgttaactgacgtcataag 230  Q
    |||||||||| | |||| |||||||||||| |||||| ||||||||| | |||||||||||| |||||||||||    
T  46000291 tacccatctcgctatggtgggtatttgtacccatgaccttttaagtcagctaaaatgttaaccgacgtcataag 46000364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 230
Target Start/End: Original strand, 31112855 - 31112915
Alignment:
Q  170 atggcgggtatttgtactcatgacattttaagtcggttaaaatgttaactgacgtcataag 230  Q
    |||| |||||||||||| |||||  |||||||||||||||||||||| | | |||||||||    
T  31112855 atggtgggtatttgtacccatgatcttttaagtcggttaaaatgttagccggcgtcataag 31112915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 74; Significance: 5e-34; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 141 - 230
Target Start/End: Original strand, 10275870 - 10275959
Alignment:
Q  141 aagggaaattctttgttacccatctcaccatggcgggtatttgtactcatgacattttaagtcggttaaaatgttaactgacgtcataag 230  Q
    |||||||||||||||||||||||||||| |||| |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||    
T  10275870 aagggaaattctttgttacccatctcactatggtgggtatttgtacccatgacattttaagtcggttaaaatgttaacagacgtcataag 10275959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 157 - 230
Target Start/End: Complemental strand, 10278629 - 10278556
Alignment:
Q  157 tacccatctcaccatggcgggtatttgtactcatgacattttaagtcggttaaaatgttaactgacgtcataag 230  Q
    |||||||||  | |||| |||||||||||| |||||| ||||||||||| |||||||||||| |||||||||||    
T  10278629 tacccatcttgctatggtgggtatttgtacccatgaccttttaagtcggctaaaatgttaacagacgtcataag 10278556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 181 - 230
Target Start/End: Complemental strand, 15694287 - 15694238
Alignment:
Q  181 ttgtactcatgacattttaagtcggttaaaatgttaactgacgtcataag 230  Q
    |||||| |||||| ||| ||||||||||||||||||||  ||||||||||    
T  15694287 ttgtacccatgacctttcaagtcggttaaaatgttaacgaacgtcataag 15694238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 181 - 230
Target Start/End: Complemental strand, 15701267 - 15701218
Alignment:
Q  181 ttgtactcatgacattttaagtcggttaaaatgttaactgacgtcataag 230  Q
    |||||| |||||| ||| ||||||||||||||||||||  ||||||||||    
T  15701267 ttgtacccatgacctttcaagtcggttaaaatgttaacgaacgtcataag 15701218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 73; Significance: 2e-33; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 142 - 230
Target Start/End: Original strand, 32726260 - 32726348
Alignment:
Q  142 agggaaattctttgttacccatctcaccatggcgggtatttgtactcatgacattttaagtcggttaaaatgttaactgacgtcataag 230  Q
    |||||||||||||||||||||||| || |||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  32726260 agggaaattctttgttacccatctgactatggtgggtatttgtacccatgacattttaagtcggttaaaatgttaactgacgtcataag 32726348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 157 - 230
Target Start/End: Complemental strand, 32729289 - 32729216
Alignment:
Q  157 tacccatctcaccatggcgggtatttgtactcatgacattttaagtcggttaaaatgttaactgacgtcataag 230  Q
    |||||||||| | |||| |||||||||||| |||||| ||||||||||||||||||||||||||||||||||||    
T  32729289 tacccatctcgctatggtgggtatttgtacccatgaccttttaagtcggttaaaatgttaactgacgtcataag 32729216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 157 - 230
Target Start/End: Complemental strand, 10487364 - 10487291
Alignment:
Q  157 tacccatctcaccatggcgggtatttgtactcatgacattttaagtcggttaaaatgttaactgacgtcataag 230  Q
    ||||||||| || |||| |||||||||||| |||||| |||||||||||||||||||||||| |||||||||||    
T  10487364 tacccatcttactatggtgggtatttgtacccatgaccttttaagtcggttaaaatgttaacagacgtcataag 10487291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 72; Significance: 8e-33; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 147 - 230
Target Start/End: Original strand, 10310073 - 10310156
Alignment:
Q  147 aattctttgttacccatctcaccatggcgggtatttgtactcatgacattttaagtcggttaaaatgttaactgacgtcataag 230  Q
    |||||||||||||||||||||| |||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  10310073 aattctttgttacccatctcactatggtgggtatttgtacccatgacattttaagtcggttaaaatgttaactgacgtcataag 10310156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 143 - 222
Target Start/End: Original strand, 34278895 - 34278974
Alignment:
Q  143 gggaaattctttgttacccatctcaccatggcgggtatttgtactcatgacattttaagtcggttaaaatgttaactgac 222  Q
    |||||||||||||||||||||||||| |||| |||||||||||| |||||||||||||||||||||||||||||||||||    
T  34278895 gggaaattctttgttacccatctcactatggtgggtatttgtacccatgacattttaagtcggttaaaatgttaactgac 34278974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 157 - 230
Target Start/End: Complemental strand, 10316173 - 10316100
Alignment:
Q  157 tacccatctcaccatggcgggtatttgtactcatgacattttaagtcggttaaaatgttaactgacgtcataag 230  Q
    |||||||||| | |||| |||||||||||| |||||| ||||||||||||||||||||||||||||||||||||    
T  10316173 tacccatctcgctatggtgggtatttgtacccatgaccttttaagtcggttaaaatgttaactgacgtcataag 10316100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 157 - 230
Target Start/End: Original strand, 25603637 - 25603710
Alignment:
Q  157 tacccatctcaccatggcgggtatttgtactcatgacattttaagtcggttaaaatgttaactgacgtcataag 230  Q
    ||||||||| || |||| |||||||||||| |||||| |||||||||||||||||||||||| |||||||||||    
T  25603637 tacccatcttactatggtgggtatttgtacccatgaccttttaagtcggttaaaatgttaacagacgtcataag 25603710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 175 - 230
Target Start/End: Complemental strand, 25609185 - 25609130
Alignment:
Q  175 gggtatttgtactcatgacattttaagtcggttaaaatgttaactgacgtcataag 230  Q
    ||||| |||||| |||||| ||||||||||||||||||||||| ||||||||||||    
T  25609185 gggtaattgtacccatgaccttttaagtcggttaaaatgttaattgacgtcataag 25609130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 70; Significance: 1e-31; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 141 - 230
Target Start/End: Original strand, 29623992 - 29624081
Alignment:
Q  141 aagggaaattctttgttacccatctcaccatggcgggtatttgtactcatgacattttaagtcggttaaaatgttaactgacgtcataag 230  Q
    |||||||||||||||||||||||||||| |||| |||||||||||| |||||||||||||||||||||||||||||| ||||||| ||||    
T  29623992 aagggaaattctttgttacccatctcactatggtgggtatttgtacccatgacattttaagtcggttaaaatgttaattgacgtcgtaag 29624081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 57 - 123
Target Start/End: Complemental strand, 34007820 - 34007754
Alignment:
Q  57 atactaggatgattttcatttcaatattgtatttttatcaagttcttttgtgaaataccaatcatac 123  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  34007820 atactaggatgattttcatttctatattgtatttttatcaagttcttttgtgaaataccaatcatac 34007754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 157 - 230
Target Start/End: Complemental strand, 29629804 - 29629731
Alignment:
Q  157 tacccatctcaccatggcgggtatttgtactcatgacattttaagtcggttaaaatgttaactgacgtcataag 230  Q
    |||||||||| | |||| |||||||||||| |||||| ||||||||||||||||||||||||||||||||||||    
T  29629804 tacccatctcgctatggtgggtatttgtacccatgaccttttaagtcggttaaaatgttaactgacgtcataag 29629731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0785 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0785
Description:

Target: scaffold0785; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 143 - 230
Target Start/End: Complemental strand, 2371 - 2284
Alignment:
Q  143 gggaaattctttgttacccatctcaccatggcgggtatttgtactcatgacattttaagtcggttaaaatgttaactgacgtcataag 230  Q
    ||||||||||||||||||||||| || |||  |||||||||||| |||||| |||||||||||||||||||||||| |||||||||||    
T  2371 gggaaattctttgttacccatctaactatgatgggtatttgtacccatgaccttttaagtcggttaaaatgttaacggacgtcataag 2284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 60; Significance: 1e-25; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 143 - 230
Target Start/End: Complemental strand, 12031857 - 12031770
Alignment:
Q  143 gggaaattctttgttacccatctcaccatggcgggtatttgtactcatgacattttaagtcggttaaaatgttaactgacgtcataag 230  Q
    |||||||||||||||||||||||||| || | |||||||||||  |||||  ||||||||||||||||||||||||||||||||||||    
T  12031857 gggaaattctttgttacccatctcacgattgtgggtatttgtatccatgatcttttaagtcggttaaaatgttaactgacgtcataag 12031770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 150 - 230
Target Start/End: Complemental strand, 22057802 - 22057722
Alignment:
Q  150 tctttgttacccatctcaccatggcgggtatttgtactcatgacattttaagtcggttaaaatgttaactgacgtcataag 230  Q
    |||||||||||||||||||  ||| |||||||||||| |||||| ||||||||||| |||||||||||| |||||||||||    
T  22057802 tctttgttacccatctcactgtggtgggtatttgtacccatgaccttttaagtcggataaaatgttaaccgacgtcataag 22057722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 157 - 230
Target Start/End: Complemental strand, 7486304 - 7486231
Alignment:
Q  157 tacccatctcaccatggcgggtatttgtactcatgacattttaagtcggttaaaatgttaactgacgtcataag 230  Q
    |||||||||| | |||| |||||||||||| |||||| |||||||||||||||||||||||||||| |||||||    
T  7486304 tacccatctcgctatggtgggtatttgtacccatgaccttttaagtcggttaaaatgttaactgacatcataag 7486231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 157 - 227
Target Start/End: Original strand, 22051425 - 22051495
Alignment:
Q  157 tacccatctcaccatggcgggtatttgtactcatgacattttaagtcggttaaaatgttaactgacgtcat 227  Q
    |||||||||||| |||| |||||||||||  |||||| |||||| ||||||||||||||||||||||||||    
T  22051425 tacccatctcactatggtgggtatttgtatccatgaccttttaaatcggttaaaatgttaactgacgtcat 22051495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 157 - 230
Target Start/End: Original strand, 18528967 - 18529040
Alignment:
Q  157 tacccatctcaccatggcgggtatttgtactcatgacattttaagtcggttaaaatgttaactgacgtcataag 230  Q
    |||||||||||| |||| || |||||| || |||||| |||||||||||||||||||||||| |||||||||||    
T  18528967 tacccatctcactatggtggatatttggacccatgaccttttaagtcggttaaaatgttaacagacgtcataag 18529040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 180 - 230
Target Start/End: Complemental strand, 11140 - 11090
Alignment:
Q  180 tttgtactcatgacattttaagtcggttaaaatgttaactgacgtcataag 230  Q
    ||||||| |||||| ||||||||||||||||||||||||||||||||||||    
T  11140 tttgtacccatgaccttttaagtcggttaaaatgttaactgacgtcataag 11090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0820 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0820
Description:

Target: scaffold0820; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 175 - 230
Target Start/End: Original strand, 5272 - 5327
Alignment:
Q  175 gggtatttgtactcatgacattttaagtcggttaaaatgttaactgacgtcataag 230  Q
    |||||||| ||| |||||| ||||||||||||||||| ||||||||||||||||||    
T  5272 gggtatttatacccatgaccttttaagtcggttaaaaggttaactgacgtcataag 5327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University