View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19193_high_81 (Length: 250)
Name: NF19193_high_81
Description: NF19193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19193_high_81 |
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Alignment Details
Target: chr5 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 16212620 - 16212846
Alignment:
| Q |
1 |
ttggttggccgtccacaacgcaatgcctactttaattttgcttaatcacagaaacatagtgccctctgctgtttgtaactgttgcgtcctccaaaatgaa |
100 |
Q |
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| T |
16212620 |
ttggttggctgtccacaacgcaatgcctactttaattttgcttaatcacagaaacatagtgccctctgctgtttgtaactgttgcgtcctccaaaatgaa |
16212719 |
T |
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| Q |
101 |
acttttctccgttgtattagggactgcagctattctaagactgtatggcatcacctcggtgaaaacaaattaaacgcacgtctagactcacactacaatt |
200 |
Q |
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| T |
16212720 |
acttttctccgttgtattagggattgcagctattctaagactgtatggcatcacctccgtgaaaacaaattaaacgcacgtctagactcacactacaatt |
16212819 |
T |
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| Q |
201 |
tgtagcttcggaaaattcacagaaaat |
227 |
Q |
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| T |
16212820 |
tgtagcttcggaaaattcacagaaaat |
16212846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 42 - 142
Target Start/End: Complemental strand, 31010836 - 31010736
Alignment:
| Q |
42 |
ttaatcacagaaacatagtgccctctgctgtttgtaactgttgcgtcctccaaaatgaaacttttctccgttgtattagggactgcagctattctaagac |
141 |
Q |
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| T |
31010836 |
ttaatcatagaaacatggcaccctctgccgtttgtagctgttgttgcctccaaaacgaaacttttcttcattgtattaggaactacaacttttctaagac |
31010737 |
T |
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| Q |
142 |
t |
142 |
Q |
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| T |
31010736 |
t |
31010736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 164 - 222
Target Start/End: Original strand, 33734374 - 33734429
Alignment:
| Q |
164 |
aacaaattaaacgcacgtctagactcacactacaatttgtagcttcggaaaattcacag |
222 |
Q |
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| T |
33734374 |
aacaaattaa-cgcacgtctagactcac--tacaatttgtagcttcgggaaattcacag |
33734429 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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